Browse Element(s) Details


OsAffx.5421.1.S1_at

Description tigr:9635.m02278
TID=OsAffx.5421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2389011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5421.1.S1_at--575--4471Chr07:13508689..13508713 (25 bp)
GCCTGCTCCGCGTCTCGGAGAGCGA
LOC_Os07g23890
OsAffx.5421.1.S1_at--117--1251Chr07:13508842..13508866 (25 bp)
AGTTGGTGGGCGACTGTCTCTACTA
LOC_Os07g23890
OsAffx.5421.1.S1_at--1040--4591Chr07:13508851..13508875 (25 bp)
GCGACTGTCTCTACTACTGGGACAA
LOC_Os07g23890
OsAffx.5421.1.S1_at--816--9531Chr07:13508860..13508884 (25 bp)
TCTACTACTGGGACAACACGGCGGC
LOC_Os07g23890
OsAffx.5421.1.S1_at--1052--1851Chr07:13508899..13508923 (25 bp)
ACGAGGCCTTCGTGTTCAACGTGGC
LOC_Os07g23890
OsAffx.5421.1.S1_at--218--4311Chr07:13508905..13508929 (25 bp)
CCTTCGTGTTCAACGTGGCGTCGAG
LOC_Os07g23890
OsAffx.5421.1.S1_at--35--6131Chr07:13508962..13508986 (25 bp)
GAGTGTCGAGCCCACTGTGGTATTT
LOC_Os07g23890
OsAffx.5421.1.S1_at--67--1931Chr07:13508975..13508999 (25 bp)
ACTGTGGTATTTCTTGCCGGCTTGG
LOC_Os07g23890
OsAffx.5421.1.S1_at--711--10691Chr07:13508988..13509012 (25 bp)
TTGCCGGCTTGGGAGAAGACAAATT
LOC_Os07g23890
OsAffx.5421.1.S1_at--1077--5371Chr07:13509014..13509038 (25 bp)
GAAGAAGCCGGTACAATATGATGAT
LOC_Os07g23890
OsAffx.5421.1.S1_at--233--3111Chr07:13509028..13509052 (25 bp)
AATATGATGATAGCCTCCCGGTACA
LOC_Os07g23890
Target Sequence 
GCCTGCTCCGCGTCTCGGAGAGCGAGGTGTTCGTCCTGAGGTACGACCCGGGGGCGCGCGGGCCGCGCTGGGTGGAGGCG
AAGGACCTCGGAGGCCACGCGGTGTTCCTCGGGGCAAACGACGCGGCGGTGCGCGTCGTCGTGGACTCGTCGGAGTTGGT
GGGCGACTGTCTCTACTACTGGGACAACACGGCGGCGCCGGAGGGAGGCTACGAGGCCTTCGTGTTCAACGTGGCGTCGA
GGGGCTCCGCGCGGCGGCTGCCGGTGGCCGGAGGAGTGTCGAGCCCACTGTGGTATTTCTTGCCGGCTTGGGAGAAGACA
AATTTGAAGAAGCCGGTACAATATGATGATAGCCTCCCGGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis