Browse Element(s) Details


OsAffx.799.1.S1_at

Description gb:NM_192654.1
DB_XREF= gi:34912391
GEN=B1085F01.15
TID=OsAffx.799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1085F01.15 (B1085F01.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g238801/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified
LOC_Os07g23850Os.54178.1.S1_at1/117+13468705..13469514Hevamine A precursor, putative
LOC_Os07g23860OsAffx.5418.1.S1_at11/117+13470767..13472793hypothetical protein
LOC_Os07g23870OsAffx.5419.1.S1_at11/117+13477296..13481653hypothetical protein
LOC_Os07g23870OsAffx.8853.1.S1_at1/117+13477296..13481653hypothetical protein
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.799.1.S1_at--159--2311Chr01:24046185..24046207 (23 bp)
AAAGTGTGCATCCTCGAGGAGCTTG
NONE
OsAffx.799.1.S1_at--353--1111Chr01:24046185..24046209 (25 bp)
AGTGTGCATCCTCGAGGAGCTTGAT
NONE
OsAffx.799.1.S1_at--29--8692Chr07:13489563..13489663 (25 bp)
TGTGCATCCTCGAGGAGCTTGATGG
LOC_Os07g23880
OsAffx.799.1.S1_at--319--3631Chr01:24046204..24046228 (25 bp)
CTTGATGGCAATGACGATGGAGCTC
NONE
OsAffx.799.1.S1_at--235--8231Chr01:24046210..24046234 (25 bp)
GGCAATGACGATGGAGCTCAGAACA
NONE
OsAffx.799.1.S1_at--240--4831Chr01:24046225..24046249 (25 bp)
GCTCAGAACATGAGTGGCATGGTGT
NONE
OsAffx.799.1.S1_at--526--7531Chr01:24046238..24046262 (25 bp)
GTGGCATGGTGTGCCGAGACACCTA
NONE
OsAffx.799.1.S1_at--367--811Chr01:24046243..24046267 (25 bp)
ATGGTGTGCCGAGACACCTACGATC
NONE
OsAffx.799.1.S1_at--491--7291Chr01:24046248..24046272 (25 bp)
GTGCCGAGACACCTACGATCTTGAT
NONE
OsAffx.799.1.S1_at--767--4071Chr01:24046252..24046276 (25 bp)
CGAGACACCTACGATCTTGATCTAT
NONE
OsAffx.799.1.S1_at--575--3371Chr01:24046257..24046281 (25 bp)
CACCTACGATCTTGATCTATCACTG
NONE
Target Sequence 
AAAGTGTGCATCCTCGAGGAGCTTGATGGCAATGACGATGGAGCTCAGAACATGAGTGGCATGGTGTGCCGAGACACCTA
CGATCTTGATCTATCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis