Browse Element(s) Details


Os.9729.2.S1_at

Description gb:AK103620.1
DB_XREF= gi:32988829
TID=Os.9729.2
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C99736(E21196),AU030984(E60527), AU030985(E60527) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana BAC IG002N01; A. thaliana cDNA T20924. (AF007269) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133M03, full insert sequence.
FL= gb:AK103620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2388011/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified
LOC_Os07g23850Os.54178.1.S1_at1/117+13468705..13469514Hevamine A precursor, putative
LOC_Os07g23860OsAffx.5418.1.S1_at11/117+13470767..13472793hypothetical protein
LOC_Os07g23870OsAffx.5419.1.S1_at11/117+13477296..13481653hypothetical protein
LOC_Os07g23870OsAffx.8853.1.S1_at1/117+13477296..13481653hypothetical protein
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9729.2.S1_at--460--2271Chr07:13498785..13498809 (25 bp)
AAATCGTTTTGATCCCAGTCAGGTT
LOC_Os07g23880
Os.9729.2.S1_at--42--5731Chr07:13498887..13498911 (25 bp)
GACTCCGTTGAGAATATGCCACCAG
LOC_Os07g23880
Os.9729.2.S1_at--103--2291Chr07:13498962..13498986 (25 bp)
AAATGTGCTACCTCGGAGCGGGTCA
LOC_Os07g23880
Os.9729.2.S1_at--541--3111Chr07:13498997..13499021 (25 bp)
AATTTGGAGGTGTTCGCCACGTCCT
LOC_Os07g23880
Os.9729.2.S1_at--977--10711Chr07:13499073..13499097 (25 bp)
TTGCATTGGTAGGAACTCGCTCTCG
LOC_Os07g23880
Os.9729.2.S1_at--424--9511Chr07:13499093..13499117 (25 bp)
TCTCGTTGCTTGGTTGCATGCTATG
LOC_Os07g23880
Os.9729.2.S1_at--1098--2751Chr07:13499175..13499199 (25 bp)
AAGACGAATGTTGCACTTCCCTGTG
LOC_Os07g23880
Os.9729.2.S1_at--711--7411Chr07:13499197..13499221 (25 bp)
GTGATTGTACACTGCCAATTCCTGA
LOC_Os07g23880
Os.9729.2.S1_at--537--2871Chr07:13499223..13499247 (25 bp)
AAGGGCGTCTTGACTGACCGGCGAA
LOC_Os07g23880
Os.9729.2.S1_at--213--8391Chr07:13499242..13499266 (25 bp)
GGCGAACAGCCACACCGAGTAATAG
LOC_Os07g23880
Os.9729.2.S1_at--1048--5291Chr07:13499296..13499320 (25 bp)
GAAGGCTGAAGCTCTCTATGTGGTT
LOC_Os07g23880
Target Sequence 
AAATCGTTTTGATCCCAGTCAGGTTAGCAAATGTTTGGTGCACTGGGGAACCGGTGATGTGAACATGGAGCTTTGGTCGG
AGGAAANACCAGTTTCCAAGGAGACTCCGTTGAGAATATGCCACCAGTACGAGGTGAGACAAACAAACTAGACTGAATCC
CGCNTGGATCAGCAAATAAATGTGCTACCTCGGAGCGGGTCATCTAAATCAAAATTTGGAGGTGTTCGCCACGTCCTTCG
CTCTAAAGAGTGTGGTGCTGCTAAAACTTGTGGGCATTGCTATTGAGGTTGCATTGGTAGGAACTCGCTCTCGTTGCTTG
GTTGCATGCTATGCGATAATAATGAACTAGTAACTGCTATAGTTCGAGCTAGTCTTGGCAAAAAGGAATAAAGACGAATG
TTGCACTTCCCTGTGATTGTACACTGCCAATTCCTGAAAAGGGCGTCTTGACTGACCGGCGAACAGCCACACCGAGTAAT
AGAAACAATGTAATAAACGCATCGAGTAATTGAAGGCTGAAGCTCTCTATGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9729.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis