Browse Element(s) Details


OsAffx.5419.1.S1_at

Description tigr:9635.m02275
TID=OsAffx.5419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2387011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23820NANA7+13451734..13454998retrotransposon protein, putative, unclassified
LOC_Os07g23830NANA7+13455625..13458993retrotransposon protein, putative, unclassified
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified
LOC_Os07g23850Os.54178.1.S1_at1/117+13468705..13469514Hevamine A precursor, putative
LOC_Os07g23860OsAffx.5418.1.S1_at11/117+13470767..13472793hypothetical protein
LOC_Os07g23870OsAffx.5419.1.S1_at11/117+13477296..13481653hypothetical protein
LOC_Os07g23870OsAffx.8853.1.S1_at1/117+13477296..13481653hypothetical protein
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5419.1.S1_at--187--9071Chr07:13478882..13478906 (25 bp)
TGCTACCGTGCAGAGGGAGGCCATT
LOC_Os07g23870
OsAffx.5419.1.S1_at--1052--7591Chr07:13477816..13477840 (25 bp)
GGGCACACCTACTCAACAACAAAAA
LOC_Os07g23870
OsAffx.5419.1.S1_at--500--2411Chr07:13477796..13477820 (25 bp)
AAAAACTAGCCGAGTCCATCTTGAC
LOC_Os07g23870
OsAffx.5419.1.S1_at--924--6091Chr07:13477574..13477598 (25 bp)
GAGTCATTGGCATTATCTCCTCGTA
LOC_Os07g23870
OsAffx.5419.1.S1_at--601--8751Chr07:13477542..13477566 (25 bp)
TGTACTCAATTCGTCAGCCACGACT
LOC_Os07g23870
OsAffx.5419.1.S1_at--521--5711Chr07:13477521..13477545 (25 bp)
GACTCATACTGACCCCTACAGTGAA
LOC_Os07g23870
OsAffx.5419.1.S1_at--702--10211Chr07:13477488..13477512 (25 bp)
TATTCCACGTGCACCCGATGATATA
LOC_Os07g23870
OsAffx.5419.1.S1_at--838--8831Chr07:13477470..13477494 (25 bp)
TGATATAGGCACTCCGTCCATAGAT
LOC_Os07g23870
OsAffx.5419.1.S1_at--501--2211Chr07:13477439..13477463 (25 bp)
ACAAGCGAGTTTCCTGATATAGCAG
LOC_Os07g23870
OsAffx.5419.1.S1_at--696--3711Chr07:13477390..13477414 (25 bp)
CTGAAACCGGTCTCTATCTGGACTC
LOC_Os07g23870
OsAffx.5419.1.S1_at--569--10191Chr07:13477362..13477386 (25 bp)
TATTTTCCCAGATGCTACTCAGGAG
LOC_Os07g23870
Target Sequence 
TGCTACCGTGCAGAGGGAGGCCATTGCCACGGCGGGCGGCGCCCGACACTCCGCCAAGCTAAGGCGGTCAGTGGATCTAG
GAGTTAGCAAGGGCACACCTACTCAACAACAAAAACTAGCCGAGTCCATCTTGACCCCTCCTGAGCACCAGAAGAAGAGC
ACTCGAGCTGAGGAGTCATTGGCATTATCTCCTCGTAGTGAGACTGTACTCAATTCGTCAGCCACGACTCATACTGACCC
CTACAGTGAAGGGTTGGCTATTCCACGTGCACCCGATGATATAGGCACTCCGTCCATAGATCTTTTTACAAGCGAGTTTC
CTGATATAGCAGCTCTTTTAGATGGAGGGGCAGACCCTGAAACCGGTCTCTATCTGGACTCACCTATTTTCCCAGATGCT
ACTCAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis