Browse Element(s) Details


OsAffx.5420.1.S1_x_at

Description tigr:9635.m02277
TID=OsAffx.5420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2388010/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23840NANA7+13461292..13464835retrotransposon protein, putative, unclassified
LOC_Os07g23850Os.54178.1.S1_at1/117+13468705..13469514Hevamine A precursor, putative
LOC_Os07g23860OsAffx.5418.1.S1_at11/117+13470767..13472793hypothetical protein
LOC_Os07g23870OsAffx.5419.1.S1_at11/117+13477296..13481653hypothetical protein
LOC_Os07g23870OsAffx.8853.1.S1_at1/117+13477296..13481653hypothetical protein
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5420.1.S1_x_at--285--7031Chr07:13494742..13494766 (25 bp)
GTACATCTGACAATGCCTTCTGATT
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--1014--5331Chr07:13494769..13494793 (25 bp)
GAAGTATCCAGCTTGGTTGCGACAA
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--687--8051Chr07:13494932..13494955 (24 bp)
GGAGATGATTAAGCCTATACCTGAT
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--476--7571Chr07:13494981..13495005 (25 bp)
GGGCTGAGCTTTCAAAAACACCTGT
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--481--7731Chr07:13495052..13495076 (25 bp)
GGTGGTCGTATTATCTCGATGACAC
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--276--6571Chr07:13495415..13495439 (25 bp)
GATTCCCAGTGGCTTCATAGCAGGA
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--1011--1031Chr07:13495481..13495505 (25 bp)
AGGTCCGCTGGATGCACTGAAGAAT
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--961--6511Chr07:13495718..13495742 (25 bp)
GATATTGGTGGTGGCCTAGTTCTCC
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--1038--4351Chr07:13495741..13495765 (25 bp)
CCAGCGTCACATATCCATCTTGAAA
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--768--6451Chr07:13495766..13495790 (25 bp)
GATAACCCGAAGATTTTCCAGATTG
LOC_Os07g23880
OsAffx.5420.1.S1_x_at--485--7731NONE
GGTGGGTTTTCAAGGATAGATCTAA
NONE
Target Sequence 
GTACATCTGACAATGCCTTCTGATTCTGAAGTATCCAGCTTGGTTGCGACAAGTGAACTTGAGCAAAAGAAACGTTTGGA
GATGATTAAGCCTATACCTGATATGGATGAGCCAGCTGGACAAGAAGGGGCTGAGCTTTCAAAAACACCTGTTGATTTGA
AGAGTGGGGACTGGATGCTTAAGGTTGTACCATGGATTGGTGGTCGTATTATCTCGATGACACATCTCCCTTCTGATTCC
CAGTGGCTTCATAGCAGGATTGAAATCAATGGTTATGAAGAATACAGTGGGACTGAATATAGGTCCGCTGGATGCACTGA
AGAATACAATGTCATGAGGAGGTATCTTGAGCAATCAGGGGAGGAGGAATCTGTTTGTTTGGAAGGAGATATTGGTGGTG
GCCTAGTTCTCCAGCGTCACATATCCATCTTGAAAGATAACCCGAAGATTTTCCAGATTGACTCAAGCATTCAAGCAAGA
AATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGGATAGATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5420.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis