Browse Element(s) Details


Os.53238.1.S1_at

Description gb:AK071522.1
DB_XREF= gi:32981545
TID=Os.53238.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099N14, full insert sequence.
FL= gb:AK071522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2390011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23880Os.9729.2.S1_at11/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.5420.1.S1_x_at10/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23880OsAffx.799.1.S1_at1/117+13486663..13499325Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53238.1.S1_at--185--3951Chr07:13513124..13513148 (25 bp)
CGGCATTGAGGGATCCAGCCTTAAT
LOC_Os07g23900
Os.53238.1.S1_at--531--7671Chr07:13513059..13513083 (25 bp)
GGGTACTATGCAGGATCATCGAACT
LOC_Os07g23900
Os.53238.1.S1_at--149--10411Chr07:13513026..13513050 (25 bp)
TTATACCTGTAGTCGATCTCAGTGA
LOC_Os07g23900
Os.53238.1.S1_at--572--3431Chr07:13512978..13513002 (25 bp)
CAGAGGGTCTGGGTGTCATCTTCGT
LOC_Os07g23900
Os.53238.1.S1_at--17--9611Chr07:13512963..13512987 (25 bp)
TCATCTTCGTGAGCACAGGCGTTGG
LOC_Os07g23900
Os.53238.1.S1_at--866--4911Chr07:13512899..13512923 (25 bp)
GCTTGAAGAGCCTGGTGTCTACTTT
LOC_Os07g23900
Os.53238.1.S1_at--1000--7751Chr07:13512884..13512908 (25 bp)
TGTCTACTTTAGTGTCTTACCCTAC
LOC_Os07g23900
Os.53238.1.S1_at--1008--2271Chr07:13512149..13512173 (25 bp)
AAATCCATCGTCTTGGATCTGCTGC
LOC_Os07g23900
Os.53238.1.S1_at--681--6411Chr07:13512134..13512158 (25 bp)
GATCTGCTGCGATTGACATCTTCCA
LOC_Os07g23900
Os.53238.1.S1_at--694--6091Chr07:13512052..13512076 (25 bp)
GAGTCATCATGTTCGAATATGGTCA
LOC_Os07g23900
Os.53238.1.S1_at--300--6871Chr07:13512000..13512024 (25 bp)
GTATTCGGTTTAACATGTCTGGCAT
LOC_Os07g23900
Target Sequence 
CGGCATTGAGGGATCCAGCCTTAATGTGTGGTCGAGGAAGGTGAATCCACAAGGGGCTGCAGAATGGGTACTATGCAGGA
TCATCGAACTGGAGAAAATTATACCTGTAGTCGATCTCAGTGATGAAGCATGTGTGGTTGGCTCTGCAGAGGGTCTGGGT
GTCATCTTCGTGAGCACAGGCGTTGGCTTATTCACGATCGAGCTCAAGTCAAGGCGGGTGAAGAAGCTTGAAGAGCCTGG
TGTCTACTTTAGTGTCTTACCCTACATGAGCTTCTACACTCCTGATCGTGGCACATTGTTATCGCTAGCAAGGACTCACT
GATCTTTGATCTCATGCTCAAGAGTAACATGTTGCAAAATGGACAAATCCATCGTCTTGGATCTGCTGCGATTGACATCT
TCCAGAGATACTACTATGAAGTTGTTTATTTTCTGTTGGGCAATGTAGGTATGAGCAATTCGAGTCATCATGTTCGAATA
TGGTCATCGTATCAAATTCATCAACCATGAACTGTATTCGGTTTAACATGTCTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis