Browse Element(s) Details


OsAffx.28565.1.S1_at

Description tigr:9635.m02314
TID=OsAffx.28565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2422011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24200OsAffx.16393.1.S1_at11/117+13766562..13767023hypothetical protein
LOC_Os07g24210OsAffx.5428.1.S1_x_at11/117+13768306..13768908hypothetical protein
LOC_Os07g24220OsAffx.28565.1.S1_at11/117+13769736..13770131hypothetical protein
LOC_Os07g24230Os.25449.1.S1_at11/117+13775173..13778645folate/biopterin transporter family protein, expressed
LOC_Os07g24240NANA7+13782661..13784301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24250NANA7+13789202..13790955retrotransposon protein, putative, unclassified
LOC_Os07g24260Os.23706.1.A1_x_at1/117+13791292..13793257retrotransposon protein, putative, unclassified
LOC_Os07g24270NANA7+13794323..13794547retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28565.1.S1_at--727--1231Chr07:13769770..13769794 (25 bp)
AGTTCCTCGGTAACTGCGAGTACCA
LOC_Os07g24220
OsAffx.28565.1.S1_at--936--7831Chr07:13769778..13769802 (25 bp)
GGTAACTGCGAGTACCATGTTGTGA
LOC_Os07g24220
OsAffx.28565.1.S1_at--1074--8811Chr07:13769795..13769819 (25 bp)
TGTTGTGAATCTTCAAGTGGAGTTC
LOC_Os07g24220
OsAffx.28565.1.S1_at--871--1231Chr07:13769815..13769839 (25 bp)
AGTTCCACAGCTTCCATCAAGGTGA
LOC_Os07g24220
OsAffx.28565.1.S1_at--435--371Chr07:13769830..13769854 (25 bp)
ATCAAGGTGAGCTCTCCGTCACGGA
LOC_Os07g24220
OsAffx.28565.1.S1_at--789--8911Chr07:13769837..13769861 (25 bp)
TGAGCTCTCCGTCACGGACTATTGC
LOC_Os07g24220
OsAffx.28565.1.S1_at--1028--1551Chr07:13769866..13769890 (25 bp)
AGCTCAAGATCATGGCAGAAAACTT
LOC_Os07g24220
OsAffx.28565.1.S1_at--1155--5511Chr07:13769883..13769907 (25 bp)
GAAAACTTGGCGATGTGGGTGAACT
LOC_Os07g24220
OsAffx.28565.1.S1_at--526--7711Chr07:13769899..13769923 (25 bp)
GGGTGAACTTGTCGCTGATCTCCAA
LOC_Os07g24220
OsAffx.28565.1.S1_at--263--4751Chr07:13769912..13769936 (25 bp)
GCTGATCTCCAACTTGTCATCACCA
LOC_Os07g24220
OsAffx.28565.1.S1_at--503--9692Chr07:13770040..13770060 (21 bp)
TCACAGCAAGAATTACGAGTAGGTT
LOC_Os07g24220
Target Sequence 
AGTTCCTCGGTAACTGCGAGTACCATGTTGTGAATCTTCAAGTGGAGTTCCACAGCTTCCATCAAGGTGAGCTCTCCGTC
ACGGACTATTGCCACAAGCTCAAGATCATGGCAGAAAACTTGGCGATGTGGGTGAACTTGTCGCTGATCTCCAACTTGTC
ATCACCACCATCACAGCAAGAATTACGAGTAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis