Browse Element(s) Details


OsAffx.28597.1.S1_at

Description tigr:9635.m02543
TID=OsAffx.28597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2642011/11hypothetical protein
LOC_Os04g175601/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26380NANA7+15157949..15158803transposon protein, putative, unclassified
LOC_Os07g26390NANA7+15162714..15167237retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26400NANA7+15167486..15169442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410OsAffx.20631.1.S1_x_at7/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.33601.3.S1_x_at3/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.32823.1.S1_x_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.49936.2.A1_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26420OsAffx.28597.1.S1_at11/117+15182886..15185609hypothetical protein
LOC_Os07g26420Os.51832.1.S1_at1/117+15182886..15185609hypothetical protein
LOC_Os07g26430OsAffx.28598.1.S1_x_at11/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26430OsAffx.28598.2.S1_x_at10/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28597.1.S1_at--1150--10231Chr07:15185017..15185041 (25 bp)
TTTGGTCTGCCTTAACCTCTGATCA
LOC_Os07g26420
OsAffx.28597.1.S1_at--485--951Chr07:15185054..15185078 (25 bp)
AGGAAATGCTTCTGGTTCTTCTGAC
LOC_Os07g26420
OsAffx.28597.1.S1_at--818--6731Chr07:15185068..15185092 (25 bp)
GTTCTTCTGACTGGGCTTCAAGGAT
LOC_Os07g26420
OsAffx.28597.1.S1_at--659--3871Chr07:15185098..15185122 (25 bp)
CTGATTCTGTTTCTGTTGGTTCTGA
LOC_Os07g26420
OsAffx.28597.1.S1_at--607--8691Chr07:15185153..15185177 (25 bp)
TGTGCCACCTTCAGATAGCTTTTTG
LOC_Os07g26420
OsAffx.28597.1.S1_at--667--10871Chr07:15185175..15185199 (25 bp)
TTGGCTCTCACTGCTTTTGAGGATC
LOC_Os07g26420
OsAffx.28597.1.S1_at--62--10771Chr07:15185191..15185215 (25 bp)
TTGAGGATCCTGTTATGCCAACTAA
LOC_Os07g26420
OsAffx.28597.1.S1_at--1099--6391Chr07:15185242..15185266 (25 bp)
GATCTGTCACCCCTATTGTAACTAC
LOC_Os07g26420
OsAffx.28597.1.S1_at--122--5732Chr07:15185287..15185311 (25 bp)
GACTCCTTGCTATTTCTGATGGACA
LOC_Os07g26420
OsAffx.28597.1.S1_at--936--5311Chr07:15185484..15185508 (25 bp)
GAAGGTCCTGCTAGTTGTCCAATCC
LOC_Os07g26420
OsAffx.28597.1.S1_at--1028--3031Chr07:15185504..15185528 (25 bp)
AATCCCTCTCCTTCAGAAGATGGCA
LOC_Os07g26420
Target Sequence 
TTTGGTCTGCCTTAACCTCTGATCATCACTCCTTTCAAGGAAATGCTTCTGGTTCTTCTGACTGGGCTTCAAGGATTGTT
TCTGATTCTGTTTCTGTTGGTTCTGATGAAGTCCTTGATCCTACCCCTCTTGCTGTTGTGCCACCTTCAGATAGCTTTTT
GGCTCTCACTGCTTTTGAGGATCCTGTTATGCCAACTAAAAGGTCTTATAAGAAGAGGGCAGCTGGATCTGTCACCCCTA
TTGTAACTACAGGTTTAAGGAGAAGTTCAAGACTCCTTGCTATTTCTGATGGACACAAAATTGGTTTTAAGGATGATGAT
CTTGTTGAGCCTGATCCTAACCAGAGAATTGGAAACCCTAGGGGTAAGTCTGTTAAAAAACTGAAGCAGGTTGCTCATGA
AGCGGGGCTTCTTTTCTCAGGGAGTTCTTTGCAAGAATCAGATTTTATGGAAGATTCAGCTGAAGTGGAAGGTCCTGCTA
GTTGTCCAATCCCTCTCCTTCAGAAGATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis