Browse Element(s) Details


OsAffx.28615.1.S1_at

Description tigr:9635.m02609
TID=OsAffx.28615.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2706011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27020OsAffx.422.1.S1_at1/117+15651505..15651993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27030OsAffx.22354.2.S1_s_at11/117+15657897..15660368F-box domain containing protein
LOC_Os07g27030OsAffx.22354.1.S1_at10/117+15657897..15660368F-box domain containing protein
LOC_Os07g27040OsAffx.22353.1.S1_at11/117+15663358..15663779hypothetical protein
LOC_Os07g27050OsAffx.28614.1.S1_at10/117+15670155..15671326hypothetical protein
LOC_Os07g27060OsAffx.28615.1.S1_at11/117+15676840..15677067hypothetical protein
LOC_Os07g27070OsAffx.29376.1.S1_x_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27070Os.26442.1.S1_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27080Os.46012.2.S1_x_at8/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.46012.3.S1_x_at6/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.27088.1.A1_x_at5/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.54691.1.S1_x_at1/117+15692648..15698346retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28615.1.S1_at--363--10871Chr07:15676880..15676904 (25 bp)
TTGGCATGAAACGTGAGGTCGGTCT
LOC_Os07g27060
OsAffx.28615.1.S1_at--327--5551Chr07:15676887..15676911 (25 bp)
GAAACGTGAGGTCGGTCTCACAGAA
LOC_Os07g27060
OsAffx.28615.1.S1_at--851--6111Chr07:15676894..15676918 (25 bp)
GAGGTCGGTCTCACAGAAGGTTACC
LOC_Os07g27060
OsAffx.28615.1.S1_at--470--7811Chr07:15676900..15676924 (25 bp)
GGTCTCACAGAAGGTTACCGCCATG
LOC_Os07g27060
OsAffx.28615.1.S1_at--1069--9691Chr07:15676904..15676928 (25 bp)
TCACAGAAGGTTACCGCCATGACCG
LOC_Os07g27060
OsAffx.28615.1.S1_at--181--2891Chr07:15676910..15676934 (25 bp)
AAGGTTACCGCCATGACCGCAACGG
LOC_Os07g27060
OsAffx.28615.1.S1_at--1159--8351Chr07:15676951..15676975 (25 bp)
GGCGTCCTCGGATGGCGACGGGCCA
LOC_Os07g27060
OsAffx.28615.1.S1_at--738--9491Chr07:15676976..15677000 (25 bp)
TCTCCTCCAGCGCACGAAGCGTGGA
LOC_Os07g27060
OsAffx.28615.1.S1_at--557--1651Chr07:15676984..15677008 (25 bp)
AGCGCACGAAGCGTGGAGTCCCTGC
LOC_Os07g27060
OsAffx.28615.1.S1_at--1008--7491Chr07:15676996..15677020 (25 bp)
GTGGAGTCCCTGCTGACTACCAAGT
LOC_Os07g27060
OsAffx.28615.1.S1_at--953--6091Chr07:15676999..15677023 (25 bp)
GAGTCCCTGCTGACTACCAAGTTCC
LOC_Os07g27060
Target Sequence 
TTGGCATGAAACGTGAGGTCGGTCTCACAGAAGGTTACCGCCATGACCGCAACGGCGCGGGCGAGGCAGCCGGCGTCCTC
GGATGGCGACGGGCCATCTCCTCCAGCGCACGAAGCGTGGAGTCCCTGCTGACTACCAAGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis