Browse Element(s) Details


OsAffx.28630.1.S1_at

Description tigr:9635.m02689
TID=OsAffx.28630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27720NANA7+16165574..16169145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27730Os.56332.1.S1_at1/117+16174137..16177348hypothetical protein
LOC_Os07g27740OsAffx.18957.1.S1_at3/117+16177953..16184448retrotransposon protein, putative, unclassified
LOC_Os07g27750OsAffx.28630.1.S1_at11/117+16190490..16191819expressed protein
LOC_Os07g27760Os.23200.2.S1_x_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.2.S1_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.1.S1_x_at3/117+16195086..16204224expressed protein
LOC_Os07g27770OsAffx.28632.1.S1_at4/117+16205480..16207506transposon protein, putative, unclassified
LOC_Os07g27780Os.49082.1.S1_at9/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27780OsAffx.14529.1.S1_x_at1/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27790Os.12568.2.S1_at11/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27790Os.12568.1.S1_x_at9/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28630.1.S1_at--763--4071Chr07:16191134..16191158 (25 bp)
CGAGATCATCGCGGAAGCCGACGAG
LOC_Os07g27750
OsAffx.28630.1.S1_at--443--4511Chr07:16191118..16191142 (25 bp)
GCCGACGAGTTCAAGCGATCCTTCG
LOC_Os07g27750
OsAffx.28630.1.S1_at--618--1851Chr07:16191114..16191138 (25 bp)
ACGAGTTCAAGCGATCCTTCGCCGA
LOC_Os07g27750
OsAffx.28630.1.S1_at--942--1931Chr07:16191075..16191099 (25 bp)
ACGGCGACACCAACCGGGCTCAGAA
LOC_Os07g27750
OsAffx.28630.1.S1_at--779--1691Chr07:16191067..16191091 (25 bp)
ACCAACCGGGCTCAGAACAGAGACC
LOC_Os07g27750
OsAffx.28630.1.S1_at--650--3411Chr07:16190949..16191074 (25 bp)
CAGAGACCGGGAGAAGCTGTTCTTG
LOC_Os07g27750
OsAffx.28630.1.S1_at--352--1451Chr07:16190938..16190959 (22 bp)
AGAAGCTGTTCTTGGCGAAGCAGGA
LOC_Os07g27750
OsAffx.28630.1.S1_at--455--1311Chr07:16190866..16190890 (25 bp)
AGATGGTGCCGCACGAGATCCCGGG
LOC_Os07g27750
OsAffx.28630.1.S1_at--1122--6211Chr07:16190801..16190825 (25 bp)
GAGGCCAACGCCAAGGCGAAGCAGC
LOC_Os07g27750
OsAffx.28630.1.S1_at--1024--3371Chr07:16190780..16190804 (25 bp)
CAGCCCGGCGTGGTGGTCGTCCAGG
LOC_Os07g27750
OsAffx.28630.1.S1_at--1085--7971Chr07:16190722..16190746 (25 bp)
GGATGCGCCAGGTCCTCATGAAGCT
LOC_Os07g27750
Target Sequence 
CGAGATCATCGCGGAAGCCGACGAGTTCAAGCGATCCTTCGCCGAGAAGCGCAAGCTCAACGGCGACACCAACCGGGCTC
AGAACAGAGACCGGGAGAAGCTGTTCTTGGCGAAGCAGGAGAAGTTCCACGGGGAGGCGGAGAAGCAGTACTGGAAGGCG
ATCGCGGAGATGGTGCCGCACGAGATCCCGGGGCTGGAGAAGCGGGGCAAGAGGAGGGAGAAGCAGTCGGCGGAGGCCAA
CGCCAAGGCGAAGCAGCCCGGCGTGGTGGTCGTCCAGGGCACCAAGCCCGGCAAGCCCACCGACCTCTCCCGGATGCGCC
AGGTCCTCATGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis