Browse Element(s) Details


OsAffx.28637.2.S1_at

Description tigr:9635.m02703
TID=OsAffx.28637.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2788011/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27850OsAffx.16445.1.S1_at10/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27850Os.13577.1.S1_at1/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27860OsAffx.5466.1.S1_at11/117+16261482..16262043hypothetical protein
LOC_Os07g27870Os.53668.1.S1_at10/117+16263027..16264845thioesterase family protein, expressed
LOC_Os07g27880OsAffx.28637.2.S1_at11/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27880OsAffx.28637.1.S1_x_at8/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27890OsAffx.5467.1.S1_x_at11/117+16273695..16274697hypothetical protein
LOC_Os07g27900NANA7+16276843..16279693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27910NANA7+16281032..16281547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27920OsAffx.28634.1.S1_at11/117+16282620..16282928hypothetical protein
LOC_Os07g27930Os.5304.1.S1_at9/117+16288275..16291748DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os07g27940NANA7+16293116..16293668Protease inhibitor/seed storage/LTP family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28637.2.S1_at--870--8371Chr07:16271770..16271794 (25 bp)
GGCGTTCGAGATGGTGCACGGCGTG
LOC_Os07g27880
OsAffx.28637.2.S1_at--217--4431Chr07:16271849..16271873 (25 bp)
GCCATGGCGGCTGACTCGCGGTTTA
LOC_Os07g27880
OsAffx.28637.2.S1_at--398--8331Chr07:16271857..16271881 (25 bp)
GGCTGACTCGCGGTTTATCATGGAC
LOC_Os07g27880
OsAffx.28637.2.S1_at--1086--5711Chr07:16271861..16271885 (25 bp)
GACTCGCGGTTTATCATGGACATGG
LOC_Os07g27880
OsAffx.28637.2.S1_at--1078--4131Chr07:16271865..16271889 (25 bp)
CGCGGTTTATCATGGACATGGCCAT
LOC_Os07g27880
OsAffx.28637.2.S1_at--701--391Chr07:16271921..16271945 (25 bp)
ATCACCTCGATGGTGGATGTCGCGG
LOC_Os07g27880
OsAffx.28637.2.S1_at--693--3971Chr07:16272022..16272046 (25 bp)
CGTGATCGATTCCATCCCGGCTGAT
LOC_Os07g27880
OsAffx.28637.2.S1_at--444--91Chr07:16272030..16272054 (25 bp)
ATTCCATCCCGGCTGATCATGGCGA
LOC_Os07g27880
OsAffx.28637.2.S1_at--794--6431Chr07:16272044..16272068 (25 bp)
GATCATGGCGATGTTGTTCAGTTTG
LOC_Os07g27880
OsAffx.28637.2.S1_at--210--8851Chr07:16272706..16272730 (25 bp)
TGATCTGATTATTTCGGTTACGAGG
LOC_Os07g27880
OsAffx.28637.2.S1_at--432--10471Chr07:16272723..16272747 (25 bp)
TTACGAGGAAGAGTGGTGCAAGATA
LOC_Os07g27880
Target Sequence 
GGCGTTCGAGATGGTGCACGGCGTGGGATTGTGGGGCGCCTGCAGCCGCGCCCCGGATCTCGGTGAGCACTTCAACGACG
CCATGGCGGCTGACTCGCGGTTTATCATGGACATGGCCATCAACGGCTCGGGCCGCCAGGTGTTCGACAAGATCACCTCG
ATGGTGGATGTCGCGGGTGGCACCGGCGCGGCGGCCAGGGCGGTGGCCGCCGCGTTCCCGCATATCAAGTGCACCGTGCT
GGACCTTCCTCACGTGATCGATTCCATCCCGGCTGATCATGGCGATGTTGTTCAGTTTGTTGCAGGTGATATGATGGATT
TCATCCCCAAAGCAGATGCCCTCCTGCTTAAGTTTGTGCTACATGATTGGAGTGATGAGGACTGCATAAAGATACTAAAA
CGATGCAAAGAAGCAATTATTCCTTCTAGAGCTGCAGGAGGAAAGATCATCATTTTAGATGTTGTAGTTGGATCTTCTTC
TGAAGCAATATGCCAAGGAACCCAACAATTGTTTGATCTGATTATTTCGGTTACGAGGAAGAGTGGTGCAAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28637.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis