Browse Element(s) Details


OsAffx.5467.1.S1_x_at

Description tigr:9635.m02704
TID=OsAffx.5467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2789011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27850OsAffx.16445.1.S1_at10/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27850Os.13577.1.S1_at1/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27860OsAffx.5466.1.S1_at11/117+16261482..16262043hypothetical protein
LOC_Os07g27870Os.53668.1.S1_at10/117+16263027..16264845thioesterase family protein, expressed
LOC_Os07g27880OsAffx.28637.2.S1_at11/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27880OsAffx.28637.1.S1_x_at8/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27890OsAffx.5467.1.S1_x_at11/117+16273695..16274697hypothetical protein
LOC_Os07g27900NANA7+16276843..16279693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27910NANA7+16281032..16281547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27920OsAffx.28634.1.S1_at11/117+16282620..16282928hypothetical protein
LOC_Os07g27930Os.5304.1.S1_at9/117+16288275..16291748DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os07g27940NANA7+16293116..16293668Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5467.1.S1_x_at--273--6171Chr07:16274459..16274483 (25 bp)
GAGGATACTGTATATGACAAGGAAT
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--647--3091Chr07:16274437..16274461 (25 bp)
AATATGAAAAAGATGGCTCGCCCAC
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--457--8491Chr07:16274424..16274448 (25 bp)
TGGCTCGCCCACAGAAAACATCAAT
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--573--9331Chr07:16274420..16274444 (25 bp)
TCGCCCACAGAAAACATCAATGTAT
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--1137--7331Chr07:16274379..16274403 (25 bp)
GTGCACGCATCCTTGGTACACTGCC
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--960--3531Chr07:16274372..16274396 (25 bp)
CATCCTTGGTACACTGCCTTGCAGA
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--204--1971Chr07:16274041..16274246 (25 bp)
ACTGATCCACTTGAGGAATATGAAA
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--467--931Chr07:16274028..16274052 (25 bp)
AGGAATATGAAAAAGACGGCTCGCC
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--995--311Chr07:16273975..16273999 (25 bp)
ATACGAGTGTGCACACATCCTTGGT
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--1138--7331Chr07:16273967..16273991 (25 bp)
GTGCACACATCCTTGGTACACTGCC
LOC_Os07g27890
OsAffx.5467.1.S1_x_at--755--7831Chr07:16273956..16273977 (22 bp)
GGTACACTGCCTTGCAAATAAGCAT
LOC_Os07g27890
Target Sequence 
GAGGATACTGTATATGACAAGGAATATGAAAAAGATGGCTCGCCCACAGAAAACATCAATGTATATGACAAAATACGAGC
GTGCACGCATCCTTGGTACACTGCCTTGCAGATAAGCATGAATGCTCTTGTTATGGTCGAGCTTGATGGGGAGACTGATC
CACTTGAGGAATATGAAAAAGACGGCTCGCCCATAGAAAACATCAATGTATATGACAAAATACGAGTGTGCACACATCCT
TGGTACACTGCCTTGCAAATAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5467.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis