Browse Element(s) Details


Os.53668.1.S1_at

Description gb:AK104968.1
DB_XREF= gi:32990177
TID=Os.53668.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E04, full insert sequence.
FL= gb:AK104968.1 gb:AK073834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2787010/11thioesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27834Os.46610.1.A1_x_at2/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.3347.1.S1_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.27810.1.S1_x_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27850OsAffx.16445.1.S1_at10/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27850Os.13577.1.S1_at1/117+16257634..16260440C2 domain-containing protein, putative
LOC_Os07g27860OsAffx.5466.1.S1_at11/117+16261482..16262043hypothetical protein
LOC_Os07g27870Os.53668.1.S1_at10/117+16263027..16264845thioesterase family protein, expressed
LOC_Os07g27880OsAffx.28637.2.S1_at11/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27880OsAffx.28637.1.S1_x_at8/117+16271312..16272793O-methyltransferase family protein
LOC_Os07g27890OsAffx.5467.1.S1_x_at11/117+16273695..16274697hypothetical protein
LOC_Os07g27900NANA7+16276843..16279693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27910NANA7+16281032..16281547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27920OsAffx.28634.1.S1_at11/117+16282620..16282928hypothetical protein
LOC_Os07g27930Os.5304.1.S1_at9/117+16288275..16291748DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53668.1.S1_at--191--4151NONE
CGCCCGACTCAATTCCGAAGTGGAA
NONE
Os.53668.1.S1_at--1063--1072Chr07:16264385..16264409 (25 bp)
AGGGCAGATCCGTGGTGGTTACTAC
LOC_Os07g27870
Os.53668.1.S1_at--586--1451Chr07:16264436..16264460 (25 bp)
AGAAGCTCTGCTATTCATCTCGAGC
LOC_Os07g27870
Os.53668.1.S1_at--542--9871Chr07:16264468..16264492 (25 bp)
TACATCATGCCTGTGGTGAGCCTGT
LOC_Os07g27870
Os.53668.1.S1_at--31--10171Chr07:16264615..16264639 (25 bp)
TATCATATGCCTATCCAGCAACCTT
LOC_Os07g27870
Os.53668.1.S1_at--667--2611Chr07:16264634..16264658 (25 bp)
AACCTTCCAAAGCTCAGATGCCTTG
LOC_Os07g27870
Os.53668.1.S1_at--1083--6351Chr07:16264650..16264674 (25 bp)
GATGCCTTGAAAGGCTTCCCTTTAA
LOC_Os07g27870
Os.53668.1.S1_at--681--10491Chr07:16264671..16264695 (25 bp)
TTAAGTTCCGCATCCTTGTTATTTT
LOC_Os07g27870
Os.53668.1.S1_at--846--6471Chr07:16264787..16264811 (25 bp)
GATACAGTTCTGTTTTCACGCTTTG
LOC_Os07g27870
Os.53668.1.S1_at--490--10511Chr07:16264801..16264825 (25 bp)
TTCACGCTTTGACCTTCAAGTCTTA
LOC_Os07g27870
Os.53668.1.S1_at--578--2831Chr07:16264818..16264842 (25 bp)
AAGTCTTATTGCTCCGCAGTATTCA
LOC_Os07g27870
Target Sequence 
CGCCCGACTCAATTCCGAAGTGGAAGTTGAAGCGCAGATACTCAGGAAGGGCAGATCCGTGGTGGTTACTACGGTTGAGT
TTAGGCTCAAGGATACCAAGAAGCTCTGCTATTCATCTCGAGCCACCATCTACATCATGCCTGTGGTGAGCCTGTGAAAA
ACCACATGGTACGTGGATGACCAAGTGTTTGTTTACACAACAATTACTGTGTAGTATATATATGTGCATATATAGCAAAT
CTATATATGCCACATTCACAAACATAGATGAGAACATTATCATATGCCTATCCAGCAACCTTCCAAAGCTCAGATGCCTT
GAAAGGCTTCCCTTTAAGTTCCGCATCCTTGTTATTTTCACTTGGAACTTCAGCCAACAATGAATGTATGTTAGTCAGGA
CATCCAGACAAGAAGTATATAAAAGATTAAACCATGCGAGCTAGTATATGATACAGTTCTGTTTTCACGCTTTGACCTTC
AAGTCTTATTGCTCCGCAGTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis