Browse Element(s) Details


OsAffx.28643.1.S1_at

Description tigr:9635.m02748
TID=OsAffx.28643.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2830011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified
LOC_Os07g28350NANA7+16547938..16548285hypothetical protein
LOC_Os07g28360NANA7+16549629..16553867retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28643.1.S1_at--867--7831Chr07:16527564..16527588 (25 bp)
GGTAAATATTGATCTGTCCTGCAAC
LOC_Os07g28300
OsAffx.28643.1.S1_at--210--7951Chr07:16527516..16527540 (25 bp)
GGATATTAGCATGCTCACTGCACTG
LOC_Os07g28300
OsAffx.28643.1.S1_at--1077--3091Chr07:16527423..16527447 (25 bp)
AATAGAATCTTTGGACCTGTCACAC
LOC_Os07g28300
OsAffx.28643.1.S1_at--46--3151Chr07:16527381..16527405 (25 bp)
AATTCCTACAAGTTTATCAGCCCCT
LOC_Os07g28300
OsAffx.28643.1.S1_at--100--4651Chr07:16527356..16527380 (25 bp)
GCGTCACTGAGCCACTTGAATTTGT
LOC_Os07g28300
OsAffx.28643.1.S1_at--520--8211Chr07:16527254..16527278 (25 bp)
GGCAATCCGGGACTTTGTGGCCCAC
LOC_Os07g28300
OsAffx.28643.1.S1_at--78--8411Chr07:16527236..16527260 (25 bp)
GGCCCACCACTCTCAAGGAATTGTT
LOC_Os07g28300
OsAffx.28643.1.S1_at--58--5591Chr07:16527201..16527225 (25 bp)
GAAATTACTGCCAGACGCCGTTGAT
LOC_Os07g28300
OsAffx.28643.1.S1_at--283--7871Chr07:16527153..16527177 (25 bp)
GGTTTTCCTGTACCTTGGCATGGGC
LOC_Os07g28300
OsAffx.28643.1.S1_at--143--8591Chr07:16527114..16527138 (25 bp)
TGGTCTCTGGGTTGTCTTATGCACC
LOC_Os07g28300
OsAffx.28643.1.S1_at--136--9591Chr07:16527055..16527079 (25 bp)
TCTTGGTTTCTGACCGCTTGTACGA
LOC_Os07g28300
Target Sequence 
GGTAAATATTGATCTGTCCTGCAACAATTTAACAGGCCATATTCCTGAGGATATTAGCATGCTCACTGCACTGAAAAACT
TGAACCTATCTTGGAATCATCTAAGCGGGGTAATACCAACAAACATTGGAGCACTACAATCAATAGAATCTTTGGACCTG
TCACACAATGAACTTTTTGGCCAAATTCCTACAAGTTTATCAGCCCCTGCGTCACTGAGCCACTTGAATTTGTCCTATAA
CAATTTGTCAGGACAAATACCTTATGGTAATCAGCTACGAACACTTGATGATCAGGCATCTATATATATCGGCAATCCGG
GACTTTGTGGCCCACCACTCTCAAGGAATTGTTCGGAATCGTCGAAATTACTGCCAGACGCCGTTGATGAAGACAAAAGT
TTGAGCGATGGGGTTTTCCTGTACCTTGGCATGGGCATAGGATGGGTAGTTGGTCTCTGGGTTGTCTTATGCACCTTCTT
GTTCATGCAGAGATGGAGAATCATTTGTTTCTTGGTTTCTGACCGCTTGTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis