Browse Element(s) Details


OsAffx.28646.1.S1_at

Description tigr:9635.m02774
TID=OsAffx.28646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2855011/11hypothetical protein
LOC_Os09g069791/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28510Os.27691.2.S1_x_at2/117+16683217..16689054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28510Os.27691.1.S1_x_at1/117+16683217..16689054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28530NANA7+16692797..16696269retrotransposon protein, putative, unclassified
LOC_Os07g28540Os.28943.1.S1_x_at4/117+16696890..16700285retrotransposon protein, putative, unclassified
LOC_Os07g28550OsAffx.28646.1.S1_at11/117+16709218..16709836hypothetical protein
LOC_Os07g28560NANA7+16711658..16714838hypothetical protein
LOC_Os07g28570Os.53509.1.S1_at11/117+16721574..16724325Leucine Rich Repeat family protein, expressed
LOC_Os07g28580OsAffx.28647.1.S1_at11/117+16727042..16727369hypothetical protein
LOC_Os07g28590Os.4216.1.S1_a_at3/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590Os.46314.3.S1_at2/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590Os.4216.2.S1_x_at1/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590OsAffx.265.1.S1_at1/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28646.1.S1_at--764--8496Chr11:13342712..13342733 (22 bp)
TGGCTTGCTCGCTGCTACCAGAATG
NONE
OsAffx.28646.1.S1_at--993--10713Chr04:23048380..23048493 (25 bp)
TTGCTCGCTGCTACCAGAATGCGCT
NONE
OsAffx.28646.1.S1_at--564--4772Chr05:17358421..17358440 (20 bp)
GCTGCTACCAGAATGCGCTCTACTT
NONE
OsAffx.28646.1.S1_at--312--3012Chr08:14157519..14157538 (20 bp)
AATGCGCTCTACTTCGTACCCGGAT
NONE
OsAffx.28646.1.S1_at--232--5713Chr11:13342767..13342786 (20 bp)
GACTACGGTGATCTCGAGGGCTATC
NONE
OsAffx.28646.1.S1_at--768--39711Chr11:13342767..13342791 (25 bp)
CGGTGATCTCGAGGGCTATCACCAC
NONE
OsAffx.28646.1.S1_at--316--9871Chr07:16709320..16709344 (25 bp)
TACACCAACCTCCAACTTGCTGTGG
LOC_Os07g28550
OsAffx.28646.1.S1_at--106--2631Chr07:16709314..16709338 (25 bp)
AACCTCCAACTTGCTGTGGGATACT
LOC_Os07g28550
OsAffx.28646.1.S1_at--576--3811Chr07:16709311..16709335 (25 bp)
CTCCAACTTGCTGTGGGATACTGTT
LOC_Os07g28550
OsAffx.28646.1.S1_at--144--2071Chr07:16709306..16709330 (25 bp)
ACTTGCTGTGGGATACTGTTGATAG
LOC_Os07g28550
OsAffx.28646.1.S1_at--36--4731Chr07:16709302..16709326 (25 bp)
GCTGTGGGATACTGTTGATAGAAAA
LOC_Os07g28550
Target Sequence 
TGGCTTGCTCGCTGCTACCAGAATGCGCTCTACTTCGTACCCGGATAGGGAGGACTACGGTGATCTCGAGGGCTATCACC
ACCTCTACACCAACCTCCAACTTGCTGTGGGATACTGTTGATAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis