Browse Element(s) Details


OsAffx.28647.1.S1_at

Description tigr:9635.m02777
TID=OsAffx.28647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2858011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28550OsAffx.28646.1.S1_at11/117+16709218..16709836hypothetical protein
LOC_Os07g28560NANA7+16711658..16714838hypothetical protein
LOC_Os07g28570Os.53509.1.S1_at11/117+16721574..16724325Leucine Rich Repeat family protein, expressed
LOC_Os07g28580OsAffx.28647.1.S1_at11/117+16727042..16727369hypothetical protein
LOC_Os07g28590Os.4216.1.S1_a_at3/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590Os.46314.3.S1_at2/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590Os.4216.2.S1_x_at1/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590OsAffx.265.1.S1_at1/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28600OsAffx.23366.2.S1_s_at1/117+16735985..16739552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28600OsAffx.24844.1.S1_at1/117+16735985..16739552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28610Os.8455.1.S1_at11/117+16741876..16743814expressed protein
LOC_Os07g28620Os.47463.1.S1_x_at6/117+16749256..16752952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28620Os.14491.2.S1_x_at5/117+16749256..16752952transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28647.1.S1_at--4--6431Chr07:16727072..16727093 (22 bp)
GATCTAGCACTAGCTAATGAGGGTG
LOC_Os07g28580
OsAffx.28647.1.S1_at--642--1492Chr07:16727077..16727249 (25 bp)
AGCACTAGCTAATGAGGGTGGCGAC
LOC_Os07g28580
OsAffx.28647.1.S1_at--117--2032Chr07:16727080..16727252 (25 bp)
ACTAGCTAATGAGGGTGGCGACGAC
LOC_Os07g28580
OsAffx.28647.1.S1_at--475--10011Chr07:16727082..16727254 (25 bp)
TAGCTAATGAGGGTGGCGACGACAA
LOC_Os07g28580
OsAffx.28647.1.S1_at--231--1571Chr07:16727083..16727255 (25 bp)
AGCTAATGAGGGTGGCGACGACAAT
LOC_Os07g28580
OsAffx.28647.1.S1_at--1066--3231Chr07:16727261..16727285 (25 bp)
CAAGCTGCGTGAGGGCAGATCTGGC
LOC_Os07g28580
OsAffx.28647.1.S1_at--338--491Chr07:16727279..16727303 (25 bp)
ATCTGGCGGCGCTAGACTCGAGACT
LOC_Os07g28580
OsAffx.28647.1.S1_at--81--9471Chr07:16727280..16727304 (25 bp)
TCTGGCGGCGCTAGACTCGAGACTA
LOC_Os07g28580
OsAffx.28647.1.S1_at--994--8471Chr07:16727282..16727306 (25 bp)
TGGCGGCGCTAGACTCGAGACTAGC
LOC_Os07g28580
OsAffx.28647.1.S1_at--835--3691Chr07:16727290..16727314 (25 bp)
CTAGACTCGAGACTAGCGGATCCCC
LOC_Os07g28580
OsAffx.28647.1.S1_at--332--1411Chr07:16727299..16727323 (25 bp)
AGACTAGCGGATCCCCCTCTGCGGG
LOC_Os07g28580
Target Sequence 
GATCTAGCACTAGCTAATGAGGGTGGCGACGACAATGGCAGCAAGCTGCGTGAGGGCAGATCTGGCGGCGCTAGACTCGA
GACTAGCGGATCCCCCTCTGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis