Browse Element(s) Details


Os.8455.1.S1_at

Description gb:AK120365.1
DB_XREF= gi:37989988
TID=Os.8455.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068P10, full insert sequence.
FL= gb:AK061626.1 gb:AK120365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2861011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28570Os.53509.1.S1_at11/117+16721574..16724325Leucine Rich Repeat family protein, expressed
LOC_Os07g28580OsAffx.28647.1.S1_at11/117+16727042..16727369hypothetical protein
LOC_Os07g28590Os.4216.1.S1_a_at3/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590Os.46314.3.S1_at2/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590Os.4216.2.S1_x_at1/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28590OsAffx.265.1.S1_at1/117+16729132..16731003transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g28600OsAffx.23366.2.S1_s_at1/117+16735985..16739552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28600OsAffx.24844.1.S1_at1/117+16735985..16739552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28610Os.8455.1.S1_at11/117+16741876..16743814expressed protein
LOC_Os07g28620Os.47463.1.S1_x_at6/117+16749256..16752952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28620Os.14491.2.S1_x_at5/117+16749256..16752952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28630NANA7+16755594..16758899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28640Os.29856.1.S1_x_at1/117+16762082..16763559hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8455.1.S1_at--451--6831Chr07:16742746..16742770 (25 bp)
GTTTACATACCGGAACCTCATCTTC
LOC_Os07g28610
Os.8455.1.S1_at--56--1371Chr07:16743431..16743455 (25 bp)
AGAGCACCTACAATGAAATCACCGG
LOC_Os07g28610
Os.8455.1.S1_at--653--8071Chr07:16743455..16743479 (25 bp)
GGAGCAGCAGCTAATTTCATACCAT
LOC_Os07g28610
Os.8455.1.S1_at--847--1511Chr07:16743507..16743531 (25 bp)
AGCAGCAGGACTGCATCTGTCGGCA
LOC_Os07g28610
Os.8455.1.S1_at--754--3871Chr07:16743523..16743547 (25 bp)
CTGTCGGCAGCCATGCCAGTGAAGA
LOC_Os07g28610
Os.8455.1.S1_at--146--9051Chr07:16743554..16743578 (25 bp)
TGCTAACGTTTTGAGACTGGTCCCT
LOC_Os07g28610
Os.8455.1.S1_at--834--10251Chr07:16743563..16743587 (25 bp)
TTTGAGACTGGTCCCTCCATTATTT
LOC_Os07g28610
Os.8455.1.S1_at--127--171Chr07:16743581..16743605 (25 bp)
ATTATTTCCATCTTATCCCCTGGCT
LOC_Os07g28610
Os.8455.1.S1_at--404--10431Chr07:16743593..16743617 (25 bp)
TTATCCCCTGGCTCAAAGCAGACAA
LOC_Os07g28610
Os.8455.1.S1_at--80--5911Chr07:16743636..16743660 (25 bp)
GAGCTGCTCATGTACCTATTTTAAT
LOC_Os07g28610
Os.8455.1.S1_at--483--3111Chr07:16743674..16743698 (25 bp)
AATATGTTTTCAGTTTCCGCTCCAG
LOC_Os07g28610
Target Sequence 
GTTTACATACCGGAACCTCATCTTCCAGCCAGACAGGGAAGCTCTGGTGAGCAAAATCAAGAGCACCTACAATGAAATCA
CCGGGAGCAGCAGCTAATTTCATACCATTTTCGAGAAGATTTCTGTAAATCAGAGAGCAGCAGGACTGCATCTGTCGGCA
GCCATGCCAGTGAAGAGGAGGTTGCTAACGTTTTGAGACTGGTCCCTCCATTATTTCCATCTTATCCCCTGGCTCAAAGC
AGACAAAATACTATTATTGCTGATGAGCTGCTCATGTACCTATTTTAATTCAACAATAATGAAATATGTTTTCAGTTTCC
GCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis