Browse Element(s) Details


OsAffx.28651.1.S1_x_at

Description tigr:9635.m02806
TID=OsAffx.28651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Piwi domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2885011/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28860OsAffx.28652.1.S1_at11/117+16903895..16904599hypothetical protein
LOC_Os07g28870OsAffx.16460.1.S1_at11/117+16907539..16908369hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28651.1.S1_x_at--1111--5051Chr07:16896702..16896821 (25 bp)
GCAGCTCATTTTCTACAGGGACGGC
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--525--4071Chr07:16896827..16896851 (25 bp)
CGAGGGTCAGTTCCAGCAAGTTGTA
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--967--8191Chr07:16897075..16897099 (25 bp)
GGAAGTCTCTGTATGCTGGCAAGCC
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--586--8231Chr07:16897092..16897116 (25 bp)
GGCAAGCCACGAATTACCTTCATAG
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--597--6711Chr07:16897194..16897313 (25 bp)
GTTCGTCCAGGCACAGTAGTTGATA
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--174--6411Chr07:16897318..16897342 (25 bp)
GATCTGTCACCCTCGAGAGTTTGAT
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--1158--6851Chr07:16897336..16897360 (25 bp)
GTTTGATTTCTTCCTGTGCAGCCAA
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--999--131Chr07:16897507..16897531 (25 bp)
ATTACCATGTGCTGCGCGACGACAA
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--920--10411Chr07:16897684..16897706 (23 bp)
TTATATACAAGCTGCACTCGCTCGG
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--134--6831Chr07:16898094..16898118 (25 bp)
GTTTACTACGCTCATAAGCTCGCAT
LOC_Os07g28850
OsAffx.28651.1.S1_x_at--78--6371Chr07:16898163..16898187 (25 bp)
GATCCAGGTGCTGCTAAGTTCCAGT
LOC_Os07g28850
Target Sequence 
GCAGCTCATTTTCTACAGGGACGGCGTAAGCGAGGGTCAGTTCCAGCAAGTTGTAGAGAGCGAAATACCGGAGATAGAAA
AGGCTTGGAAGTCTCTGTATGCTGGCAAGCCACGAATTACCTTCATAGTGGTGCAGAAGAGGCATCATACAAGGCTGTTC
CCCAACAATTACAATGATCCACGCGGCATGGATGGGACTGGAAATGTTCGTCCAGGCACAGTAGTTGATACAGTGATCTG
TCACCCTCGAGAGTTTGATTTCTTCCTGTGCAGCCAAGCCGGGATCAAAGGGACAAGCCGTCCTAGCCATTACCATGTGC
TGCGCGACGACAACAACTTCACCGCAGATCAGCTTCAGTCTGTCACAAACAACCTGTGCTACTTATATACAAGCTGCACT
CGCTCGGTGTCTATTCCACCTCCTGTTTACTACGCTCATAAGCTCGCATTCCGCGCTCGTTTCTACCTCACCCAAGTTCC
CGTCGCCGGTGGAGATCCAGGTGCTGCTAAGTTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28651.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis