Browse Element(s) Details


OsAffx.28659.1.S1_at

Description tigr:9635.m02875
TID=OsAffx.28659.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2953011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29490Os.46012.3.S1_x_at11/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.2.S1_x_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.3.S1_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.27088.1.A1_x_at4/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29500Os.39431.1.S1_x_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500Os.39431.1.S1_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500OsAffx.25367.1.S1_at1/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29510NANA7+17322638..17323463hypothetical protein
LOC_Os07g29520Os.49985.1.S1_at1/117+17328358..17332727retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29530OsAffx.28659.1.S1_at11/117+17333241..17333705hypothetical protein
LOC_Os07g29540OsAffx.14659.1.S1_at3/117+17339956..17342125retrotransposon protein, putative, unclassified
LOC_Os07g29540OsAffx.30032.3.S1_at1/117+17339956..17342125retrotransposon protein, putative, unclassified
LOC_Os07g29540OsAffx.30032.1.S1_at1/117+17339956..17342125retrotransposon protein, putative, unclassified
LOC_Os07g29550OsAffx.30451.1.S1_s_at4/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29550OsAffx.12135.1.S1_x_at2/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29550OsAffx.12135.1.S1_at1/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g29550OsAffx.30451.3.S1_x_at1/117+17347084..17351844retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28659.1.S1_at--477--9451Chr07:17333625..17333649 (25 bp)
TCGGCACTGCACTCCGTATATGCAT
LOC_Os07g29530
OsAffx.28659.1.S1_at--411--6891Chr07:17333610..17333634 (25 bp)
GTATATGCATGCTTTCTCCGCACGC
LOC_Os07g29530
OsAffx.28659.1.S1_at--284--5111Chr07:17333587..17333611 (25 bp)
GCACTGGATCTGAGCTCATCCACGA
LOC_Os07g29530
OsAffx.28659.1.S1_at--158--591Chr07:17333570..17333594 (25 bp)
ATCCACGACGATGGATGGAGCCGGT
LOC_Os07g29530
OsAffx.28659.1.S1_at--237--9331Chr07:17333536..17333560 (25 bp)
TCGCCGTCCACGACGATCGAGCTGG
LOC_Os07g29530
OsAffx.28659.1.S1_at--124--531Chr07:17333521..17333545 (25 bp)
ATCGAGCTGGTCGATCAGCTGCCGC
LOC_Os07g29530
OsAffx.28659.1.S1_at--60--8531Chr07:17333451..17333475 (25 bp)
TGGACACGCCTTGCTCGACTTTGTG
LOC_Os07g29530
OsAffx.28659.1.S1_at--651--5551Chr07:17333394..17333418 (25 bp)
GAAACCTTGCCATCATCGATCTACT
LOC_Os07g29530
OsAffx.28659.1.S1_at--923--411Chr07:17333383..17333407 (25 bp)
ATCATCGATCTACTCGCGCTGAGCT
LOC_Os07g29530
OsAffx.28659.1.S1_at--323--111Chr07:17333322..17333346 (25 bp)
ATTCTTCGCCGACAGTGCTGCCGCT
LOC_Os07g29530
OsAffx.28659.1.S1_at--557--9131Chr07:17333298..17333322 (25 bp)
TGCGGCTCGTTCTCAGCGTCGTTGG
LOC_Os07g29530
Target Sequence 
TCGGCACTGCACTCCGTATATGCATGCTTTCTCCGCACGCACTGGATCTGAGCTCATCCACGACGATGGATGGAGCCGGT
GTGAAGGGGTCGCCGTCCACGACGATCGAGCTGGTCGATCAGCTGCCGCCTATCCCCTCCGTCGCCGGCACCAGCAGCTT
CCACCAGCGACCGCTGGACACGCCTTGCTCGACTTTGTGCTCGCTACATCAGCAGACCACCCAAGCCGGCCGAAACCTTG
CCATCATCGATCTACTCGCGCTGAGCTCGTCACCACCATGAGGCCGCACGTCGCTGCCACCACATTCTTCGCCGACAGTG
CTGCCGCTGCGGCTCGTTCTCAGCGTCGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis