Browse Element(s) Details


OsAffx.28661.1.S1_x_at

Description tigr:9635.m02882
TID=OsAffx.28661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g208203/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g115062/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20800OsAffx.21161.1.S1_at1/112+12279588..12285881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20810OsAffx.31069.2.S1_x_at1/112+12286838..12289780hypothetical protein
LOC_Os02g20820OsAffx.30389.2.S1_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20820OsAffx.28661.1.S1_x_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20830OsAffx.10633.1.S1_at7/112+12309921..12312303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20840Os.27541.1.A1_at1/112+12312582..12318463retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28661.1.S1_x_at--414--8379Chr08:13776884..13776908 (25 bp)
GGCGTCGGCTTGGTGTCGGTGGAGG
NONE
OsAffx.28661.1.S1_x_at--47--7551Chr07:17394023..17394047 (25 bp)
GTGGCGGCAGCGACTCTATCTCCGG
NONE
OsAffx.28661.1.S1_x_at--617--5572Chr07:17394049..17394073 (25 bp)
GAAAGGTCACATGGCTCGCCGGGCA
NONE
OsAffx.28661.1.S1_x_at--342--8337Chr07:17394061..17394085 (25 bp)
GGCTCGCCGGGCAGTGTCACCACTG
NONE
OsAffx.28661.1.S1_x_at--110--7596Chr08:15550561..15550585 (25 bp)
GGGCAGTGTCACCACTGCCGTCCAT
NONE
OsAffx.28661.1.S1_x_at--510--9173Chr08:15550576..15550600 (25 bp)
TGCCGTCCATCCGTGGTAGGCGCAG
NONE
OsAffx.28661.1.S1_x_at--605--9231Chr07:17394089..17394113 (25 bp)
TCCATCCGTGGTAGGCGCAGAACTG
NONE
OsAffx.28661.1.S1_x_at--302--7851Chr07:17394098..17394122 (25 bp)
GGTAGGCGCAGAACTGCACCCCCTG
NONE
OsAffx.28661.1.S1_x_at--589--3852Chr07:17394120..17394144 (25 bp)
CTGCACACAGATACGGTGAGGCACG
NONE
OsAffx.28661.1.S1_x_at--851--2131Chr07:17394126..17394150 (25 bp)
ACAGATACGGTGAGGCACGACGGCA
NONE
OsAffx.28661.1.S1_x_at--858--311Chr07:17394130..17394154 (25 bp)
ATACGGTGAGGCACGACGGCAACCG
NONE
Target Sequence 
GGCGTCGGCTTGGTGTCGGTGGAGGTGGTGAAGGGGCGGTCGGTGGTGGCGGCAGCGACTCTATCTCCGGGGAAAGGTCA
CATGGCTCGCCGGGCAGTGTCACCACTGCCGTCCATCCGTGGTAGGCGCAGAACTGCACCCCCTGCACACAGATACGGTG
AGGCACGACGGCAACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28661.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis