Browse Element(s) Details


OsAffx.28663.1.S1_at

Description tigr:9635.m02897
TID=OsAffx.28663.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2972011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29710OsAffx.22314.2.S1_at11/117+17460700..17460948hypothetical protein
LOC_Os07g29710OsAffx.22314.1.S1_x_at4/117+17460700..17460948hypothetical protein
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29750OsAffx.16482.1.S1_x_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750OsAffx.16482.1.S1_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750Os.46631.1.S1_x_at3/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760Os.20514.1.S1_x_at11/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760OsAffx.22518.1.S1_x_at1/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28663.1.S1_at--1012--6091Chr07:17469619..17469643 (25 bp)
GAGTCCTTTGACACAATTATGGTTG
LOC_Os07g29720
OsAffx.28663.1.S1_at--82--7271Chr07:17469617..17469641 (25 bp)
GTCCTTTGACACAATTATGGTTGCT
LOC_Os07g29720
OsAffx.28663.1.S1_at--498--2231Chr07:17469607..17469631 (25 bp)
ACAATTATGGTTGCTAGGTTGGGAC
LOC_Os07g29720
OsAffx.28663.1.S1_at--1152--10071Chr07:17469602..17469626 (25 bp)
TATGGTTGCTAGGTTGGGACAATCG
LOC_Os07g29720
OsAffx.28663.1.S1_at--920--7691Chr07:17469577..17469601 (25 bp)
GGGTCATCGCCTGGGAGATCATACG
LOC_Os07g29720
OsAffx.28663.1.S1_at--454--7131Chr07:17469575..17469599 (25 bp)
GTCATCGCCTGGGAGATCATACGGT
LOC_Os07g29720
OsAffx.28663.1.S1_at--851--531Chr07:17469572..17469596 (25 bp)
ATCGCCTGGGAGATCATACGGTGGT
LOC_Os07g29720
OsAffx.28663.1.S1_at--91--8291Chr07:17469481..17469505 (25 bp)
GGCATTAGCAGTGCGTCGCTTGTAT
LOC_Os07g29720
OsAffx.28663.1.S1_at--701--10451Chr07:17469477..17469501 (25 bp)
TTAGCAGTGCGTCGCTTGTATTTGC
LOC_Os07g29720
OsAffx.28663.1.S1_at--599--1131Chr07:17469472..17469496 (25 bp)
AGTGCGTCGCTTGTATTTGCCGTTC
LOC_Os07g29720
OsAffx.28663.1.S1_at--255--9131Chr07:17469470..17469494 (25 bp)
TGCGTCGCTTGTATTTGCCGTTCCT
LOC_Os07g29720
Target Sequence 
GAGTCCTTTGACACAATTATGGTTGCTAGGTTGGGACAATCGGGGTCATCGCCTGGGAGATCATACGGTGGTGGTGGTGA
TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGGGCATTAGCAGTGCGTCGCTTG
TATTTGCCGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis