Browse Element(s) Details


OsAffx.28681.1.S1_x_at

Description tigr:9635.m02972
TID=OsAffx.28681.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3052011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30469Os.51026.1.S1_x_at1/117+18031389..18032849UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g30480NANA7+18034299..18037355transposon protein, putative, Mutator sub-class
LOC_Os07g30494OsAffx.28679.1.S1_at11/117+18038154..18038612hypothetical protein
LOC_Os07g30510OsAffx.28680.1.S1_at10/117+18045363..18049416Protein kinase domain containing protein
LOC_Os07g30520OsAffx.28681.1.S1_x_at11/117+18054436..18055022hypothetical protein
LOC_Os07g30530Os.10827.1.S1_x_at10/117+18059726..18063514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30530Os.46055.2.S1_x_at6/117+18059726..18063514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30540OsAffx.28545.4.S1_s_at11/117+18063653..18064669hypothetical protein
LOC_Os07g30550OsAffx.25936.1.S1_s_at8/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30550OsAffx.25936.7.S1_s_at7/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30550OsAffx.25936.2.S1_x_at5/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30550OsAffx.25936.5.S1_x_at2/117+18067115..18070153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g30560OsAffx.28682.1.S1_at11/117+18074289..18074663hypothetical protein
LOC_Os07g30560OsAffx.28682.2.S1_at9/117+18074289..18074663hypothetical protein
LOC_Os07g30560OsAffx.28682.2.S1_x_at8/117+18074289..18074663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28681.1.S1_x_at--847--8252Chr07:18054484..18054508 (25 bp)
GGCAGCGGCAGATTTGGCAACGCCA
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--589--8252Chr07:18054490..18054514 (25 bp)
GGCAGATTTGGCAACGCCACCCTCG
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--1087--10233Chr07:18054496..18054520 (25 bp)
TTTGGCAACGCCACCCTCGGGAGGG
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--250--1092Chr07:18054517..18054541 (25 bp)
AGGGCCGGATCTGCTGCCCTAGGTA
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--916--7952Chr07:18054523..18054547 (25 bp)
GGATCTGCTGCCCTAGGTAGCAGCT
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--777--3812Chr07:18054530..18054554 (25 bp)
CTGCCCTAGGTAGCAGCTCGGTGCG
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--1002--7672Chr07:18054565..18054589 (25 bp)
GGGTTTGGCGCTCGGCGGCAGGCGG
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--553--672Chr07:18054607..18054631 (25 bp)
ATGACAGTGGGCAACCGGGAGCAGG
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--521--8212Chr07:18054616..18054640 (25 bp)
GGCAACCGGGAGCAGGCGGCCGAAA
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--833--4512Chr07:18054634..18054658 (25 bp)
GCCGAAAGCGGCGAGCAGCATCGAC
LOC_Os07g30520
OsAffx.28681.1.S1_x_at--883--2672Chr07:18054639..18054663 (25 bp)
AAGCGGCGAGCAGCATCGACAAGGC
LOC_Os07g30520
Target Sequence 
GGCAGCGGCAGATTTGGCAACGCCACCCTCGGGAGGGCCGGATCTGCTGCCCTAGGTAGCAGCTCGGTGCGAGGCGGCGG
GGGGTTTGGCGCTCGGCGGCAGGCGGNGCGCGTGGATCCNACGATGACAGTGGGCAACCGGGAGCAGGCGGCCGAAAGCG
GCGAGCAGCATCGACAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28681.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis