Browse Element(s) Details


OsAffx.28713.1.S1_x_at

Description tigr:9635.m03198
TID=OsAffx.28713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3254011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32520OsAffx.16525.1.S1_at11/117+19368359..19369118hypothetical protein
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28713.1.S1_x_at--145--6131Chr07:19391845..19391869 (25 bp)
GAGTGGCGTCTGACCTCAAGCTGGA
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--573--1091Chr07:19391844..19391868 (25 bp)
AGTGGCGTCTGACCTCAAGCTGGAC
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--497--7531Chr07:19391843..19391867 (25 bp)
GTGGCGTCTGACCTCAAGCTGGACT
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--715--4651Chr07:19391840..19391864 (25 bp)
GCGTCTGACCTCAAGCTGGACTGTT
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--709--9471Chr07:19391837..19391861 (25 bp)
TCTGACCTCAAGCTGGACTGTTGTA
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--234--3851Chr07:19391836..19391860 (25 bp)
CTGACCTCAAGCTGGACTGTTGTAG
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--970--5831Chr07:19391834..19391858 (25 bp)
GACCTCAAGCTGGACTGTTGTAGGG
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--1162--8291Chr07:19391809..19391833 (25 bp)
GGCTGTACAAGCGAGGCTGGGAGGA
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--258--1611Chr07:19391785..19391809 (25 bp)
AGCTGGAAAGAGGAGCGGGTTGCGT
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--986--6171Chr07:19391776..19391800 (25 bp)
GAGGAGCGGGTTGCGTGGCGTTGGA
LOC_Os07g32540
OsAffx.28713.1.S1_x_at--699--971Chr07:19391752..19391776 (25 bp)
AGGAGGCAATGCAGCGAAGAAAATG
LOC_Os07g32540
Target Sequence 
GAGTGGCGTCTGACCTCAAGCTGGACTGTTGTAGGGGGCTGTACAAGCGAGGCTGGGAGGAGCTGGAAAGAGGAGCGGGT
TGCGTGGCGTTGGAGGAGGCAATGCAGCGAAGAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28713.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis