Browse Element(s) Details


OsAffx.28765.1.S1_at

Description tigr:9635.m03517
TID=OsAffx.28765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g356001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35560Os.27755.1.S1_at11/117+21278612..21280941Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35570OsAffx.28764.1.S1_at11/117+21291434..21292444MBOAT family protein, expressed
LOC_Os07g35580Os.19978.1.S1_at11/117+21293506..21297882Protein kinase domain containing protein, expressed
LOC_Os07g35600Os.54578.1.S1_at11/117+21297939..21309645expressed protein
LOC_Os07g35600OsAffx.28765.1.S1_at1/117+21297939..21309645expressed protein
LOC_Os07g35610OsAffx.16571.1.S1_at10/117+21313950..21318698Kelch motif family protein, expressed
LOC_Os07g35620OsAffx.16572.3.S1_at11/117+21324007..21324669expressed protein
LOC_Os07g35630OsAffx.2182.1.S1_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35630OsAffx.828.1.S1_x_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28765.1.S1_at--17--3151Chr07:21304118..21304138 (21 bp)
AATTCAGTGGCACAGCGGAAGCTGC
NONE
OsAffx.28765.1.S1_at--424--5411NONE
GAAGCTGCAGCACTAAACCCTCGGA
NONE
OsAffx.28765.1.S1_at--134--9451Chr07:21304497..21304521 (25 bp)
TCGGATGCACTACGCGTACATTGCA
NONE
OsAffx.28765.1.S1_at--811--7011Chr07:21304512..21304536 (25 bp)
GTACATTGCAAGTGCGACCGTCTTC
NONE
OsAffx.28765.1.S1_at--1006--6671Chr07:21304582..21304606 (25 bp)
GTTGCTGCCACTTTGCTGGAGGTTG
NONE
OsAffx.28765.1.S1_at--942--3251Chr07:21304709..21304733 (25 bp)
CAAAAGTCCGAATGCTTTCGACGTA
NONE
OsAffx.28765.1.S1_at--799--6751Chr07:21304753..21304777 (25 bp)
GTTACTCGGCATTTGCAGCACAATG
NONE
OsAffx.28765.1.S1_at--706--8331Chr07:21304777..21304801 (25 bp)
GGCGGTCTATGTTTACATCGGGCAT
NONE
OsAffx.28765.1.S1_at--475--6591Chr07:21304832..21304856 (25 bp)
GATTGATCAGTGTTGCTCTTCAAGT
NONE
OsAffx.28765.1.S1_at--98--8071Chr07:21304873..21304897 (25 bp)
GGAGCACACTTGCATCCATACATAC
NONE
OsAffx.28765.1.S1_at--1099--8092Chr07:21305030..21305054 (25 bp)
GGACCTATCATTCTACGACACTAAC
NONE
Target Sequence 
AATTCAGTGGCACAGCGGAAGCTGCAGCACTAAACCCTCGGATGCACTACGCGTACATTGCAAGTGCGACCGTCTTCCAA
GACCTCCGTCAGGCCTTCGAGCGGATGACGAACATTGAAATGGTTGCTGCCACTTTGCTGGAGGTTGAGATGTATCGATA
TAATGCAACTATCAAAAGTCCGAATGCTTTCGACGTATTCAAAATTAAAATGACATGTTACTCGGCATTTGCAGCACAAT
GGCGGTCTATGTTTACATCGGGCATGCCGAATTTGAAGAAACTTGTGTTGCGTTTGATTGATCAGTGTTGCTCTTCAAGT
GGATGTGAATGGAATTGGAGCACACTTGCATCCATACATACAATGATCCGTAACAAACTTACACACAACAAGCTCAACAA
ACTTGTCTATGTCAACTACAACCTTCGCCTTCAAATTCAGCAAACAAATACCCAAGTTAGGAAGGACGATGACGATCCCC
TTCAAAGGCCAGCGGACCTATCATTCTACGACACTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis