Browse Element(s) Details


OsAffx.28841.1.S1_at

Description tigr:9638.m01225
TID=OsAffx.28841.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ankyrin repeat containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g138706/11expressed protein
LOC_Os07g402305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13840OsAffx.30408.1.S1_at11/1110+7286322..7291035hypothetical protein
LOC_Os10g13850Os.46081.1.S1_at11/1110+7294503..7295642expressed protein
LOC_Os10g13870OsAffx.28841.1.S1_at6/1110+7303051..7304424expressed protein
LOC_Os10g13870OsAffx.27597.1.S1_at1/1110+7303051..7304424expressed protein
LOC_Os10g13880OsAffx.8353.1.S1_at11/1110+7309083..7310097hypothetical protein
LOC_Os10g13900OsAffx.30410.1.S1_at10/1110+7318147..7319931transposon protein, putative, unclassified
LOC_Os10g13914Os.46709.1.S1_x_at11/1110+7322725..7329235expressed protein
LOC_Os10g13914Os.39297.1.S1_at11/1110+7322725..7329235expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28841.1.S1_at--697--3351Chr07:24120752..24120776 (25 bp)
CACGCTGGAGTCAGTGGAGCACGCT
LOC_Os07g40230
OsAffx.28841.1.S1_at--612--5091Chr07:24120734..24120758 (25 bp)
GCACGCTGGAGCGTCGTGTAGTCAT
LOC_Os07g40230
OsAffx.28841.1.S1_at--96--1831Chr07:24120732..24120756 (25 bp)
ACGCTGGAGCGTCGTGTAGTCATCA
LOC_Os07g40230
OsAffx.28841.1.S1_at--154--8551Chr07:24120728..24120752 (25 bp)
TGGAGCGTCGTGTAGTCATCACGCG
LOC_Os07g40230
OsAffx.28841.1.S1_at--13--8371Chr07:24120673..24120697 (25 bp)
GGCGGTGGACCTCAGCGCCGGTGCC
LOC_Os07g40230
OsAffx.28841.1.S1_at--317--2411Chr10:7303126..7303230 (25 bp)
AAACAAGGAGCTCAGCTTGGCAGTT
LOC_Os10g13870
OsAffx.28841.1.S1_at--988--2911Chr10:7303122..7303145 (24 bp)
AAGGAGCTCAGCTTGGCAGTTACTG
LOC_Os10g13870
OsAffx.28841.1.S1_at--91--8091Chr10:7303120..7303144 (25 bp)
GGAGCTCAGCTTGGCAGTTACTGAT
LOC_Os10g13870
OsAffx.28841.1.S1_at--814--6771Chr10:7303104..7303128 (25 bp)
GTTACTGATGTTTTAACTTGTGCAT
LOC_Os10g13870
OsAffx.28841.1.S1_at--103--6291Chr10:7303098..7303122 (25 bp)
GATGTTTTAACTTGTGCATATGCAG
LOC_Os10g13870
OsAffx.28841.1.S1_at--601--10492Chr08:11434379..11434399 (21 bp)
TTAACTTGTGCATATGCAGTGCTGC
NONE
Target Sequence 
CACGCTGGAGTCAGTGGAGCACGCTGGAGCGTCGTGTAGTCATCACGCGGGGGATGGGGCCGAGGTCGGCTCCGGTCGCG
GCGGTGGACCTCAGCGCCGGTGCCGGCGGATGGGGCCGAGGTCAGAACCGGCCGCGGCGGCTCCGGCTNNNNNGNNGNAG
NNNNNGCNNNGNNGNNGNNNNNGCNNCGGNNGNNNNNANGNNGAAGAATCAGAGGCTCCGGCNGCGGCAGTCCANGCGGG
GAGGATATCCAGCGAGGATGCGGCGGCGCNGCGGCAGAACATCCGGGGAGGAGGAGGAGCTAGCGAGGAGGANNNNAAGC
GAAGTCTTCGCGTGTGGAGNGATGTCTTNGCGNGTGGAGGAGGAGNGAAGTATTCNGCGTGGCGTGGATGGATGGATCNT
GCGGTGGNNNNNTNNANNNCGNNGNNNNNNGNTANANANNGNNNNNANNGAGATATAACAATGATATTGCTTGTCAATGG
TGCAGATGAGACAAGAAGAAACAAGGAGCTCAGCTTGGCAGTTACTGATGTTTTAACTTGTGCATATGCAGTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis