Browse Element(s) Details


OsAffx.28911.2.S1_at

Description tigr:9635.m04537
TID=OsAffx.28911.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4517011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein
LOC_Os07g45150OsAffx.28910.1.S1_at11/117+26948105..26948676hypothetical protein
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28911.2.S1_at--525--6271Chr07:26964077..26964458 (25 bp)
GATGTCGTGGACATGTGTGTCAACT
LOC_Os07g45170
OsAffx.28911.2.S1_at--262--3271Chr07:26964057..26964081 (25 bp)
CAACTTGTCAGCCTTTGGCTTATAT
LOC_Os07g45170
OsAffx.28911.2.S1_at--851--5391Chr07:26964032..26964056 (25 bp)
GAAGCATCCGATGTTCCAAGAACTG
LOC_Os07g45170
OsAffx.28911.2.S1_at--158--5471Chr07:26964013..26964037 (25 bp)
GAACTGGTGTTGCAGCTAAGCTTAT
LOC_Os07g45170
OsAffx.28911.2.S1_at--385--1431Chr07:26963801..26963825 (25 bp)
AAAACCCAACCAGAGTATGACTTTG
LOC_Os07g45170
OsAffx.28911.2.S1_at--1134--5591Chr07:26963750..26963774 (25 bp)
GAAATTGCTCCAGTGGGACACAGAA
LOC_Os07g45170
OsAffx.28911.2.S1_at--266--291Chr07:26963638..26963662 (25 bp)
ATAGTGTTGCATGCTAGGGTGCGCA
LOC_Os07g45170
OsAffx.28911.2.S1_at--569--7291Chr07:26963620..26963644 (25 bp)
GTGCGCAAAACCTCTATGTACCGTG
LOC_Os07g45170
OsAffx.28911.2.S1_at--674--751Chr07:26963605..26963629 (25 bp)
ATGTACCGTGATGTTTATTCCCTGT
LOC_Os07g45170
OsAffx.28911.2.S1_at--627--9311Chr07:26963587..26963611 (25 bp)
TCCCTGTGGATTACGGAACATCATC
LOC_Os07g45170
OsAffx.28911.2.S1_at--1011--8151Chr07:26963573..26963597 (25 bp)
GGAACATCATCAACGTTTCACGGAT
LOC_Os07g45170
Target Sequence 
GATGTCGTGGACATGTGTGTCAACTTGTCAGCCTTTGGCTTATATGAAGCATCCGATGTTCCAAGAACTGGTGTTGCAGC
TAAGCTTATGAAATGTTTGAATGAAAATGGGATAAGCCCAGCCTCTACATCCAAACTAGATGTACACAGCCAAAAACCCA
ACCAGAGTATGACTTTGGCATATGTTCTGTTCAGGGGAAGCATGAAATTGCTCCAGTGGGACACAGAAGTAAGCTTAATG
CTTAATGCTTTTGTTAAGATCACCAATACAAAGACAAAGTGGTATATGTTAGTTCCAATTAGGATTTTGATGAGCATAGT
GTTGCATGCTAGGGTGCGCAAAACCTCTATGTACCGTGATGTTTATTCCCTGTGGATTACGGAACATCATCAACGTTTCA
CGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28911.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis