Browse Element(s) Details


OsAffx.28912.1.S1_at

Description tigr:9635.m04538
TID=OsAffx.28912.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4518011/11SWIM zinc finger family protein, expressed
LOC_Os10g149201/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein
LOC_Os07g45150OsAffx.28910.1.S1_at11/117+26948105..26948676hypothetical protein
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28912.1.S1_at--699--6072Chr07:26972867..26972891 (25 bp)
GAGTTAGCCCTGATACATACATGTC
LOC_Os07g45180
OsAffx.28912.1.S1_at--264--8491Chr07:26972906..26972930 (25 bp)
TGGCTTATCTTGCTGACACTTGGAG
LOC_Os07g45180
OsAffx.28912.1.S1_at--854--2231Chr07:26972935..26972959 (25 bp)
AAATTCGATGCATCGGAGGCCTTAG
LOC_Os07g45180
OsAffx.28912.1.S1_at--648--6131Chr07:26972950..26972974 (25 bp)
GAGGCCTTAGGAGAACACTACACAT
LOC_Os07g45180
OsAffx.28912.1.S1_at--320--5991Chr07:26972978..26973002 (25 bp)
GAGACTTTTGCAGAGATCCTTGCTA
LOC_Os07g45180
OsAffx.28912.1.S1_at--901--6031Chr07:26972990..26973014 (25 bp)
GAGATCCTTGCTATTCAACACTTAT
LOC_Os07g45180
OsAffx.28912.1.S1_at--1095--9171Chr07:26973069..26973093 (25 bp)
TGCCTTCCTAACATCGGACGGGACC
LOC_Os07g45180
OsAffx.28912.1.S1_at--1125--6871Chr07:26973084..26973108 (25 bp)
GGACGGGACCCAAAATGGCGTTGAT
LOC_Os07g45180
OsAffx.28912.1.S1_at--609--6511Chr07:26973398..26973422 (25 bp)
GATATATCCTGTTATCTGGACGCCA
LOC_Os07g45180
OsAffx.28912.1.S1_at--169--3911Chr07:26973413..26973437 (25 bp)
CTGGACGCCAGACTGTTTATTGGAT
LOC_Os07g45180
OsAffx.28912.1.S1_at--1036--5271Chr07:26974572..26974596 (25 bp)
GAAGGCGAGATATTGGATCAACCCC
LOC_Os07g45180
Target Sequence 
GAGTTAGCCCTGATACATACATGTCCCCTTACTACACTCTGGCTTATCTTGCTGACACTTGGAGGGGCAAATTCGATGCA
TCGGAGGCCTTAGGAGAACACTACACATTAGGAGACTTTTGCAGAGATCCTTGCTATTCAACACTTATGTTAGGAAATCC
GCCAACATGGATCCCTGATAAAAGGATGGAGTGCGGTCTTCCTGCCTTCCTAACATCGGACGGGACCCAAAATGGCGTTG
ATGAGGAAGAGCAACAATGCAGCATTGAGAGTGTATCATCAGCTGCTGACAATCAAGGCACTGAAAATCGTTCATCAAGA
GAAACTGACCAGCAAAATGCACCTAACACTGATAATGCTGATATATCCTGTTATCTGGACGCCAGACTGTTTATTGGATC
AGATGAAGGTGTGAAGGCGAGATATTGGATCAACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis