Browse Element(s) Details


OsAffx.28918.5.S1_x_at

Description gb:NM_185941.1
DB_XREF= gi:34898967
GEN=P0427D10.21
TID=OsAffx.28918.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative BLE2 protein (P0427D10.21), mRNA.
PROD=putative BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4548011/11hypothetical protein
LOC_Os07g454903/11expressed protein
LOC_Os07g455601/11expressed protein
LOC_Os07g454601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45450OsAffx.30941.1.S1_x_at11/117+27108260..27109942hypothetical protein
LOC_Os07g45460OsAffx.28918.2.S1_x_at11/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.7.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.28918.5.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45460OsAffx.22536.1.S1_x_at1/117+27115752..27123150hypothetical protein
LOC_Os07g45470NANA7+27125684..27127590hypothetical protein
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28918.5.S1_x_at--408--4471Chr07:27135190..27135214 (25 bp)
GCCTGTTGTGGAATATGTGCGAGCA
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--55--8232Chr07:27135248..27135272 (25 bp)
GGAATTGTCTTACATCTTACGAGAG
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--1160--3151Chr07:27135345..27135366 (22 bp)
CAATACTGGACTACTGGAGGTGCTG
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--982--7053Chr07:27143121..27143145 (25 bp)
GTCATTCCTGAAGACTTTGCCCGAG
LOC_Os07g45490
OsAffx.28918.5.S1_x_at--652--4533Chr07:27143139..27143163 (25 bp)
GCCCGAGAAGTAGAGCATGGTCAAA
LOC_Os07g45490
OsAffx.28918.5.S1_x_at--390--6211Chr07:27135843..27135867 (25 bp)
GAGGCTTGTCGAAGTGCTTAATGCA
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--335--2371Chr07:27135874..27135898 (25 bp)
AAACCCAGTGTTCATTGTCCCAGAA
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--774--8211Chr07:27135936..27135960 (25 bp)
GGAATTCAATTCTCGCTATGCAAAT
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--547--5411Chr07:27136003..27136027 (25 bp)
GAACGTACACCCTCGAGGGCTGAAA
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--335--2392Chr07:27136026..27136050 (25 bp)
AAACTACAGGTTGCTTTCAGGCGAC
LOC_Os07g45480
OsAffx.28918.5.S1_x_at--55--4611Chr07:27136046..27136070 (25 bp)
GCGACACAGGACTCATGGAGCACAA
LOC_Os07g45480
Target Sequence 
GCCTGTTGTGGAATATGTGCGAGCATGCTCAATCTGAGCTCAGCAACTCAGACCTTAAGGAATTGTCTTACATCTTACGA
GAGACTAGAGATAGAAAAACTGCTAATTTAAGTGTCAATTGCAATACTGGACTACTGGAGGTGCTGGAAGGAATAATGGA
TGCAGAAGGGGCAGAACTAGAGGTCCTTATTGGCCTTAGTTCACAAATATGTCAAGTCATTCCTGAAGACTTTGCCCGAG
AAGTAGAGCATGGTCAAATTAAGGAAAAATTCATAAAGAGGCTTGTCGAAGTGCTTAATGCACATATGAAACCCAGTGTT
CATTGTCCCAGAATCAGGAGGGTGATTGTTCAGCATGCCATATACTTGATGGAATTCAATTCTCGCTATGCAAATGATTT
CCACAAGTGCTGGATGGTGGAAGCACTATCAATGGTGGAACGTACACCCTCGAGGGCTGAAAACTACAGGTTGCTTTCAG
GCGACACAGGACTCATGGAGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28918.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis