Browse Element(s) Details


OsAffx.28938.1.S1_at

Description tigr:9635.m04741
TID=OsAffx.28938.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4708011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed
LOC_Os07g47100Os.4700.1.S1_at11/117+28162730..28167616sodium/hydrogen exchanger 3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28938.1.S1_at--369--5291Chr07:28141674..28141698 (25 bp)
GAATGGTTTTGTTGTCTTCGGCAGT
LOC_Os07g47080
OsAffx.28938.1.S1_at--592--8431Chr07:28141640..28141664 (25 bp)
GGCCTCATACTGACCTGTGAACATA
LOC_Os07g47080
OsAffx.28938.1.S1_at--402--4231Chr07:28141603..28141627 (25 bp)
CCGAGAGCAATGGTACCGTGGCCGT
LOC_Os07g47080
OsAffx.28938.1.S1_at--1043--9771Chr07:28141552..28141576 (25 bp)
TAAGGTTTGATGCTCGAGTCGTCTA
LOC_Os07g47080
OsAffx.28938.1.S1_at--13--9111Chr07:28141501..28141525 (25 bp)
TGCTCCGCGCTGATACTTTTAGTGT
LOC_Os07g47080
OsAffx.28938.1.S1_at--751--10071Chr07:28141482..28141506 (25 bp)
TAGTGTTCCTTGTACTCCTTTGAGA
LOC_Os07g47080
OsAffx.28938.1.S1_at--177--6291Chr07:28141424..28141448 (25 bp)
GATGTTGTTTTACTCGCATTCTTCA
LOC_Os07g47080
OsAffx.28938.1.S1_at--540--8411Chr07:28141388..28141412 (25 bp)
GGCCAAGTTCTTGTAGAGCCAGGAA
LOC_Os07g47080
OsAffx.28938.1.S1_at--954--7591Chr07:28141155..28141179 (25 bp)
GGGCACCTGTTTTCTTACAAAGAGT
LOC_Os07g47080
OsAffx.28938.1.S1_at--122--2771Chr07:28141084..28141108 (25 bp)
AAGACTGCTATTTCTGTCCGAACCA
LOC_Os07g47080
OsAffx.28938.1.S1_at--975--2751Chr07:28141046..28141070 (25 bp)
AAGACAGTGGCTTCAACCTGGAGAT
LOC_Os07g47080
Target Sequence 
GAATGGTTTTGTTGTCTTCGGCAGTGGCAACACAGGCCTCATACTGACCTGTGAACATAATTTGCCCAAGACCGAGAGCA
ATGGTACCGTGGCCGTGGTGGTGGTGGGTTTTCACACTGGTGTAAGGTTTGATGCTCGAGTCGTCTATGTCGACGCAGGC
AGAGATCTAGCCTTGCTCCGCGCTGATACTTTTAGTGTTCCTTGTACTCCTTTGAGATTCTGGGAAGATGGAGATGTTGT
TTCTGGGATTGATGTTGTTTTACTCGCATTCTTCACAATGAAGTATGGCCAAGTTCTTGTAGAGCCAGGAACATTTCCCG
GAAAGATANNNTCCGAACCAGTTTGGGATGAAGAAACTGACAGTGGAGAAATTAGATCGGACTATACATCCGAGAGTGGC
ACATCAGGGGCACCTGTTTTCTTACAAAGAGTAAACAAGGTGGTTGGAGTGAACAGTGGAGCACTTGGTGGGACTGTCAA
GACTGCTATTTCTGTCCGAACCATACATGCGGCTTTAAGACAGTGGCTTCAACCTGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis