Browse Element(s) Details


OsAffx.28996.1.S1_at

Description tigr:9636.m00171
TID=OsAffx.28996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0268010/11hypothetical protein
LOC_Os04g293506/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02680OsAffx.28996.1.S1_at10/118+1111027..1113308hypothetical protein
LOC_Os08g02690Os.7459.1.S1_at11/118+1114784..1120093MA3 domain-containing protein, putative, expressed
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28996.1.S1_at--1003--3212Chr08:1113185..1113209 (25 bp)
CAAGGTGGCGAAGGCCTCAGCAGCC
LOC_Os08g02680
OsAffx.28996.1.S1_at--831--5292Chr08:1113181..1113200 (20 bp)
GAAGGCCTCAGCAGCCGGCGATTAT
LOC_Os08g02680
OsAffx.28996.1.S1_at--86--1671NONE
AGCCGGCGATTATCTGCATTATCTT
NONE
OsAffx.28996.1.S1_at--663--473Chr08:1112150..1112174 (25 bp)
ATCTGCATTATCTTTTACACTATTG
LOC_Os08g02680
OsAffx.28996.1.S1_at--786--2171Chr08:1112134..1112158 (25 bp)
ACACTATTGTATTTGGTTAATTGGG
LOC_Os08g02680
OsAffx.28996.1.S1_at--732--10833Chr08:1112114..1112138 (25 bp)
TTGGGTTATCTATGTGAGGCCAGAT
LOC_Os08g02680
OsAffx.28996.1.S1_at--997--8413Chr08:1112097..1112121 (25 bp)
GGCCAGATGTAGTGATTGGTCTTAC
LOC_Os08g02680
OsAffx.28996.1.S1_at--386--6613Chr08:1112084..1112108 (25 bp)
GATTGGTCTTACTTGTGATGCTAAC
LOC_Os08g02680
OsAffx.28996.1.S1_at--604--7393Chr08:1112070..1112094 (25 bp)
GTGATGCTAACAAGCATGCTTTCAA
LOC_Os08g02680
OsAffx.28996.1.S1_at--944--4853Chr08:1111610..1112077 (25 bp)
GCTTTCAAAAGATCTACAGTCCTTG
LOC_Os08g02680
OsAffx.28996.1.S1_at--1046--4892Chr08:1111492..1111573 (25 bp)
GCAGACCCTTGATCAGGGTAAGAAA
LOC_Os08g02680
Target Sequence 
CAAGGTGGCGAAGGCCTCAGCAGCCGGCGATTATCTGCATTATCTTTTACACTATTGTATTTGGTTAATTGGGTTATCTA
TGTGAGGCCAGATGTAGTGATTGGTCTTACTTGTGATGCTAACAAGCATGCTTTCAAAAGATCTACAGTCCTTGACAATA
CTCCTACTTCAAAGCATTCATTGGATGATCGCAGACCCTTGATCAGGGTAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis