Browse Element(s) Details


OsAffx.29006.2.S1_at

Description tigr:9636.m00223
TID=OsAffx.29006.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0315011/11Protein kinase domain containing protein
LOC_Os08g031004/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03120Os.45173.1.S1_x_at6/118+1414409..1420978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03120Os.45173.5.S1_x_at4/118+1414409..1420978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03120OsAffx.20877.1.S1_at1/118+1414409..1420978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03130NANA8+1424427..1431151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03140NANA8+1434338..1435579retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03150OsAffx.29006.2.S1_at11/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03150Os.50872.1.S1_at4/118+1440908..1444149Protein kinase domain containing protein
LOC_Os08g03160OsAffx.29006.3.S1_x_at11/118+1447811..1450004lectin protein kinase, putative
LOC_Os08g03170Os.53070.1.S1_at11/118+1460003..1461829Protein kinase domain containing protein, expressed
LOC_Os08g03180Os.53253.1.S1_at11/118+1462078..1466880retrotransposon protein, putative, unclassified, expressed
LOC_Os08g03190OsAffx.29007.1.S1_at11/118+1466896..1467375Legume lectins beta domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29006.2.S1_at--484--4592Chr08:1442477..1442501 (25 bp)
GCGAAGCTAGGCGATTTCGGCCTTG
LOC_Os08g03150
OsAffx.29006.2.S1_at--689--4692Chr08:1442190..1442214 (25 bp)
GCGGCTCAACAATGAATACGACACA
LOC_Os08g03150
OsAffx.29006.2.S1_at--137--9012Chr08:1442178..1442202 (25 bp)
TGAATACGACACAACTAGCATGGAG
LOC_Os08g03150
OsAffx.29006.2.S1_at--878--9932Chr08:1442174..1442198 (25 bp)
TACGACACAACTAGCATGGAGTGTG
LOC_Os08g03150
OsAffx.29006.2.S1_at--254--10312Chr08:1440994..1441018 (25 bp)
TTTCGTCAAGCAACCAGCGTAACAA
LOC_Os08g03150
OsAffx.29006.2.S1_at--122--7092Chr08:1440990..1441014 (25 bp)
GTCAAGCAACCAGCGTAACAAAGAT
LOC_Os08g03150
OsAffx.29006.2.S1_at--225--4351Chr08:1440981..1441005 (25 bp)
CCAGCGTAACAAAGATAGGTGAACT
LOC_Os08g03150
OsAffx.29006.2.S1_at--1091--251Chr08:1440967..1440991 (25 bp)
ATAGGTGAACTGGAACTTTTAGTGC
LOC_Os08g03150
OsAffx.29006.2.S1_at--319--1951Chr08:1440959..1440983 (25 bp)
ACTGGAACTTTTAGTGCAGTTTCGA
LOC_Os08g03150
OsAffx.29006.2.S1_at--1067--5451Chr08:1440955..1440979 (25 bp)
GAACTTTTAGTGCAGTTTCGAACTG
LOC_Os08g03150
OsAffx.29006.2.S1_at--408--5031Chr08:1440944..1440968 (25 bp)
GCAGTTTCGAACTGGTCATCTTCTC
LOC_Os08g03150
Target Sequence 
GCGAAGCTAGGCGATTTCGGCCTTGCAAGGCTTATTGACCATGCNGTTGGGATACAAACAATGACNCANCCCTCAGGGAC
NCCAGGCTATCTTGATCCNGAATGCGTNATCACNGGCAAAGCAAGCGCNGAGTCCGATGTTTATAGTTTTGGCATTGTTC
TATTGGAAGTGGCATGNGGGAGNAGACCAATTAGCNTNCAGGACACCCANAACAATTGCCTCTTCCGACTGGTGGAATGG
GTGTGGGANCTGTACGGCCAAGGAGCCGTTCTCAANGCAGCNGACGAGCGGCTCAACAATGAATACGACACAACTAGCAT
GGAGTGTGTCATGGCNGTTGGACTNTGTCGATATCCTAGTCCTTANAGAGGGCCTGGAANTGTTGGAGTTANCNNNNNNN
NTNNNNNNNNANNNNNNTNNNNNNACNNNNNNGNTNNNNNCTNNTTTCGTCAAGCAACCAGCGTAACAAAGATAGGTGAA
CTGGAACTTTTAGTGCAGTTTCGAACTGGTCATCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29006.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis