Browse Element(s) Details


OsAffx.29043.1.S1_at

Description tigr:9636.m00465
TID=OsAffx.29043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0537011/11hypothetical protein
LOC_Os08g054101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05340Os.53862.1.S1_at11/118+2801929..2806682expressed protein
LOC_Os08g05340Os.54533.1.S1_at1/118+2801929..2806682expressed protein
LOC_Os08g05350Os.50927.1.S1_at10/118+2810099..2811734expressed protein
LOC_Os08g05360OsAffx.13097.1.S1_s_at11/118+2816089..2823719transposon protein, putative, Mutator sub-class
LOC_Os08g05370OsAffx.29043.1.S1_at11/118+2826824..2828871hypothetical protein
LOC_Os08g05370Os.51931.1.S1_at1/118+2826824..2828871hypothetical protein
LOC_Os08g05380OsAffx.29044.1.S1_at11/118+2831783..2832390hypothetical protein
LOC_Os08g05390OsAffx.25936.1.S1_s_at9/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.7.S1_s_at8/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.2.S1_x_at4/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.5.S1_x_at2/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05400NANA8+2839514..2841489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05410OsAffx.29045.1.S1_at11/118+2846115..2851266hypothetical protein
LOC_Os08g05410OsAffx.29043.1.S1_at1/118+2846115..2851266hypothetical protein
LOC_Os08g05420NANA8+2853325..2858701transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29043.1.S1_at--787--5051Chr08:2828809..2828833 (25 bp)
GCAGCTGCGCATTCTTGTATTGGGC
LOC_Os08g05370
OsAffx.29043.1.S1_at--52--1652Chr08:2848387..2848411 (25 bp)
AGCCTCGGCGTACAGTACTTTCTTG
LOC_Os08g05410
OsAffx.29043.1.S1_at--925--9571Chr08:2828764..2828788 (25 bp)
TCTTGTAATTTTTGGCGGCATGCGC
LOC_Os08g05370
OsAffx.29043.1.S1_at--936--8271Chr08:2828748..2828772 (25 bp)
GGCATGCGCAAGTTCTCCCGTATTC
LOC_Os08g05370
OsAffx.29043.1.S1_at--181--91Chr08:2828727..2828751 (25 bp)
ATTCCGCACTGCTATAGGTTTTTCA
LOC_Os08g05370
OsAffx.29043.1.S1_at--238--5811Chr08:2828679..2828703 (25 bp)
GACGCCTTGGCCATATATGCGCTTG
LOC_Os08g05370
OsAffx.29043.1.S1_at--639--2551Chr08:2828630..2828654 (25 bp)
AACTGCAGCCTGACAACAACGACAA
LOC_Os08g05370
OsAffx.29043.1.S1_at--955--291Chr08:2828606..2828630 (25 bp)
ATAGCAGCCGCGACCTAGAGGTGGT
LOC_Os08g05370
OsAffx.29043.1.S1_at--370--8671Chr08:2828582..2828606 (25 bp)
TGTGGGCACCTATTCTTCTGATGCA
LOC_Os08g05370
OsAffx.29043.1.S1_at--664--9571Chr08:2828569..2828593 (25 bp)
TCTTCTGATGCATCTTGGAGGCCAA
LOC_Os08g05370
OsAffx.29043.1.S1_at--988--7991Chr08:2828553..2828577 (25 bp)
GGAGGCCAAGTGTTCATCACCGCCT
LOC_Os08g05370
Target Sequence
GCAGCTGCGCATTCTTGTATTGGGCAGCCTCGGCGTACAGTACTTTCTTGTAATTTTTGGCGGCATGCGCAAGTTCTCCC
GTATTCCGCACTGCTATAGGTTTTTCATCTGGCTCTCGTACCTCGCTAGCGACGCCTTGGCCATATATGCGCTTGCCACT
CTCTTCAACCGCAGAAACAAACTGCAGCCTGACAACAACGACAATAGCAGCCGCGACCTAGAGGTGGTGTGGGCACCTAT
TCTTCTGATGCATCTTGGAGGCCAAGTGTTCATCACCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis