Browse Element(s) Details


OsAffx.2905.1.S1_at

Description tigr:9630.m03679
TID=OsAffx.2905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3832010/11speckle-type POZ protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein
LOC_Os02g38320OsAffx.2905.1.S1_at10/112+23166739..23168824speckle-type POZ protein, putative, expressed
LOC_Os02g38330OsAffx.12394.1.S1_at11/112+23170058..23170436hypothetical protein
LOC_Os02g38340Os.24543.1.S1_at11/112+23171716..23176224Actin-like protein 3, putative, expressed
LOC_Os02g38350Os.54155.1.S1_at11/112+23177262..23180606regulator of chromosome condensation, putative, expressed
LOC_Os02g38360Os.56216.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38360OsAffx.29313.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38370NANA2+23190422..23193828transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2905.1.S1_at--695--4151Chr02:23167642..23167666 (25 bp)
CGCGCACCGGCCAGTGCTGCAGGAT
LOC_Os02g38320
OsAffx.2905.1.S1_at--371--3851Chr02:23167698..23167722 (25 bp)
CTGCAGCTCGCGAGGCACTTCTTCG
LOC_Os02g38320
OsAffx.2905.1.S1_at--803--4071Chr02:23167814..23167838 (25 bp)
CGACGACGATTCTTGCGGAGTTCCC
LOC_Os02g38320
OsAffx.2905.1.S1_at--445--6051NONE
GAGTTCCCCTTTGCAGCAACTTCAA
NONE
OsAffx.2905.1.S1_at--696--5051Chr02:23168635..23168658 (24 bp)
GCAGCAACTTCAAGACTAACATGGA
LOC_Os02g38320
OsAffx.2905.1.S1_at--931--5571Chr02:23168665..23168689 (25 bp)
GAAAGTGGACAAGACATGGAAGCTC
LOC_Os02g38320
OsAffx.2905.1.S1_at--624--1411Chr02:23168676..23168700 (25 bp)
AGACATGGAAGCTCCTTGTGAAGAA
LOC_Os02g38320
OsAffx.2905.1.S1_at--594--8871Chr02:23168718..23168742 (25 bp)
TGATGTCTGCATGGGCCAAGAGGCC
LOC_Os02g38320
OsAffx.2905.1.S1_at--185--9211Chr02:23168745..23168769 (25 bp)
TGCCAGCGCCGGAGATAGTGCAGAA
LOC_Os02g38320
OsAffx.2905.1.S1_at--1070--4551Chr02:23168750..23168774 (25 bp)
GCGCCGGAGATAGTGCAGAAGTCAT
LOC_Os02g38320
OsAffx.2905.1.S1_at--376--7111Chr02:23168770..23168794 (25 bp)
GTCATGGGCAAAGTACAACAGCAGC
LOC_Os02g38320
Target Sequence 
CGCGCACCGGCCAGTGCTGCAGGATGGCCTCCCCCTGCGCGCACCGGCGGGGCCTCCTGCAGCTCGCGAGGCACTTCTTC
GCCGGCTGCGGCAGGAGAGTCGCCGGAGGCTGCACGCCCTGCCGGCGCTTCTTCCTGCTCCTCCGGCTACACTCCTCCGT
CTGCGACAAGTCCGACGACGATTCTTGCGGAGTTCCCCTTTGCAGCAACTTCAAGACTAACATGGAAAAAGGGAAAGTGG
ACAAGACATGGAAGCTCCTTGTGAAGAAGGTGATGAGAGCTAGGGTGATGTCTGCATGGGCCAAGAGGCCGGTGCCAGCG
CCGGAGATAGTGCAGAAGTCATGGGCAAAGTACAACAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis