Browse Element(s) Details


OsAffx.29053.1.S1_at

Description tigr:9636.m00506
TID=OsAffx.29053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0575011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05690OsAffx.16842.1.S1_at11/118+3043824..3049729ABC transporter family protein
LOC_Os08g05700NANA8+3052200..3053044hypothetical protein
LOC_Os08g05710OsAffx.29051.1.S1_at11/118+3055522..3061514ABC transporter family protein, expressed
LOC_Os08g05720NANA8+3063440..3064189Integral membrane protein
LOC_Os08g05750OsAffx.29053.1.S1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05750Os.17179.1.A1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05770NANA8+3082700..3083407hypothetical protein
LOC_Os08g05780Os.9594.1.S1_at11/118+3087435..3088496expressed protein
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29053.1.S1_at--536--1431Chr08:3076942..3076966 (25 bp)
AGAACTTGGAGTTTGCTGAGCTTGC
LOC_Os08g05750
OsAffx.29053.1.S1_at--608--5911Chr08:3076925..3076949 (25 bp)
GAGCTTGCGGCTGGAAAACTGATTG
LOC_Os08g05750
OsAffx.29053.1.S1_at--398--2911Chr08:3076898..3076922 (25 bp)
AAGGATCCACAGAGCGCAGGTGCCT
LOC_Os08g05750
OsAffx.29053.1.S1_at--528--5011Chr08:3076883..3076907 (25 bp)
GCAGGTGCCTATGTACAACTTGCAA
LOC_Os08g05750
OsAffx.29053.1.S1_at--62--2411Chr08:3076783..3076807 (25 bp)
AAACACCTGGGTATAGCTGGATAGA
LOC_Os08g05750
OsAffx.29053.1.S1_at--687--6591Chr08:3076720..3076744 (25 bp)
GATTGCACCCTCAGCTTTACTTGAT
LOC_Os08g05750
OsAffx.29053.1.S1_at--558--6691Chr08:3076646..3076670 (25 bp)
GTTCCAGATCTTGATTTTGTCCTGC
LOC_Os08g05750
OsAffx.29053.1.S1_at--785--5391Chr08:3076572..3076596 (25 bp)
GAAGCTTGCTATTTCTTTTGGTCTG
LOC_Os08g05750
OsAffx.29053.1.S1_at--1094--7171Chr08:3076552..3076576 (25 bp)
GTCTGATTAGTACTGCTCCTGGGAT
LOC_Os08g05750
OsAffx.29053.1.S1_at--131--8731Chr08:3076487..3076511 (25 bp)
TGTCATAATGCAGCCAAGGTCATCT
LOC_Os08g05750
OsAffx.29053.1.S1_at--274--7931Chr08:3076431..3076455 (25 bp)
GGATACTACACGATTCCACCATTTT
LOC_Os08g05750
Target Sequence 
AGAACTTGGAGTTTGCTGAGCTTGCGGCTGGAAAACTGATTGAAAAGGATCCACAGAGCGCAGGTGCCTATGTACAACTT
GCAAATATCTATGCTGGCGCAAATCAGTGGGATGATGTCTCTAGAGTAAGGAGGTGGATGAAGGATAATGCAGTTGTGAA
AACACCTGGGTATAGCTGGATAGAGATTAAGGGTGTGATGCATGAGTTTAGATCAAATGACAGATTGCACCCTCAGCTTT
ACTTGATCCATGAAAAACTGGGCCAGTTAGCGGAGAGGATGAAGGCAATGGGTTATGTTCCAGATCTTGATTTTGTCCTG
CATGATGTGGATGAAACTCTGAAGGTGCAGATGCTAATGAGGCACAGTGAGAAGCTTGCTATTTCTTTTGGTCTGATTAG
TACTGCTCCTGGGATGACCTTGAGGATTTTCAAGAATCTCAGGGTTTGTGGAGACTGTCATAATGCAGCCAAGGTCATCT
CCAAGATCGAGGATCGAGAAATCATTTTGAGGGATACTACACGATTCCACCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis