Browse Element(s) Details


OsAffx.29109.1.S1_at

Description tigr:9636.m00834
TID=OsAffx.29109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0881011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08770NANA8+5077283..5083369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08780OsAffx.21897.5.S1_x_at4/118+5083681..5086621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08790OsAffx.16901.1.S1_at11/118+5088060..5089137Ubiquitin family protein
LOC_Os08g08800OsAffx.29108.1.S1_at11/118+5090474..5093058hypothetical protein
LOC_Os08g08810OsAffx.29109.1.S1_at11/118+5101268..5101918hypothetical protein
LOC_Os08g08820Os.11988.1.S1_at11/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820Os.57415.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08820OsAffx.29023.1.S1_x_at2/118+5102935..5110437START domain containing protein, expressed
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29109.1.S1_at--451--9291Chr08:5101801..5101825 (25 bp)
TCCGTGTCAACGGTGACGAGACCTA
LOC_Os08g08810
OsAffx.29109.1.S1_at--344--3251Chr08:5101794..5101818 (25 bp)
CAACGGTGACGAGACCTATACAGGG
LOC_Os08g08810
OsAffx.29109.1.S1_at--696--9051Chr08:5101536..5101560 (25 bp)
TGCAGGCTCATGTCGTCGGAGCCAA
LOC_Os08g08810
OsAffx.29109.1.S1_at--621--3511Chr08:5101528..5101552 (25 bp)
CATGTCGTCGGAGCCAAGCACAGGG
LOC_Os08g08810
OsAffx.29109.1.S1_at--918--4171Chr08:5101403..5101427 (25 bp)
CCCTACGCTCCATGGCGTCAAGGAA
LOC_Os08g08810
OsAffx.29109.1.S1_at--830--2911Chr08:5101384..5101408 (25 bp)
AAGGAACTAGCGGTGGAGGCTCTCC
LOC_Os08g08810
OsAffx.29109.1.S1_at--541--8012Chr02:220899..220923 (25 bp)
GGAGGCTCTCCTGGTGCTCCATGAG
NONE
OsAffx.29109.1.S1_at--613--8611Chr08:5101359..5101383 (25 bp)
TGGTGCTCCATGAGCCATTGTACCA
LOC_Os08g08810
OsAffx.29109.1.S1_at--1038--5851Chr08:5101348..5101372 (25 bp)
GAGCCATTGTACCAGGCACTCGAAG
LOC_Os08g08810
OsAffx.29109.1.S1_at--1136--3411Chr08:5101336..5101360 (25 bp)
CAGGCACTCGAAGAAGGAGGCCGAC
LOC_Os08g08810
OsAffx.29109.1.S1_at--402--2911Chr08:5101323..5101347 (25 bp)
AAGGAGGCCGACACGCTGAGCTACT
LOC_Os08g08810
Target Sequence 
TCCGTGTCAACGGTGACGAGACCTATACAGGGGGCGGTGGCAAAGCGCGGGAGGACACGGCGACAGCGGGCGGCGCCCTC
TCAAGCTCGTGCCAATGGCGACGAGGCCTGTGCAGGGGCGGTGGCAAAGCGCGAGGAGGACTCTGCGGCGGCGTGCGGCA
CCGAGGAGGGGATTGGAGGACGAGGGCGGCGGGGGTGGACGCAGCATGGGGTGGCAGGGTGGCGGCGGGCGGTGGCGGAG
GCCGCTCGAGGCGTCATGGACAACCTGCAGGCTCATGTCGTCGGAGCCAAGCACAGGGTTGGTGGCGGACTCGCGTGCGG
CGGTGCTGGCGCGGTCCTGCGCGTGCGAGGCGGCCTCCTAGTGGCGCCACGCCTCGTTGCGGGCGGTGTGCTCCTGCTCC
CTACGCTCCATGGCGTCAAGGAACTAGCGGTGGAGGCTCTCCTGGTGCTCCATGAGCCATTGTACCAGGCACTCGAAGAA
GGAGGCCGACACGCTGAGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis