Browse Element(s) Details


OsAffx.29161.1.S1_at

Description tigr:9636.m01194
TID=OsAffx.29161.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g125902/11hypothetical protein
LOC_Os11g474411/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g122401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12540Os.48015.1.A1_at3/118+7415398..7418320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12540Os.45173.1.S1_x_at2/118+7415398..7418320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12540Os.56524.1.S1_x_at1/118+7415398..7418320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12540OsAffx.31869.5.S1_x_at1/118+7415398..7418320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12540Os.45212.1.S1_x_at1/118+7415398..7418320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12540Os.48015.1.A1_x_at1/118+7415398..7418320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12550Os.56524.1.S1_x_at1/118+7421830..7423506retrotransposon protein, putative, unclassified
LOC_Os08g12550OsAffx.435.1.S1_at1/118+7421830..7423506retrotransposon protein, putative, unclassified
LOC_Os08g12550Os.45212.1.S1_x_at1/118+7421830..7423506retrotransposon protein, putative, unclassified
LOC_Os08g12560OsAffx.21779.1.S1_at1/118+7426912..7428837retrotransposon protein, putative, unclassified
LOC_Os08g12570NANA8+7434663..7436897retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12580NANA8+7437621..7438358hypothetical protein
LOC_Os08g12590OsAffx.29161.2.S1_at11/118+7443131..7443951hypothetical protein
LOC_Os08g12590OsAffx.29161.1.S1_at2/118+7443131..7443951hypothetical protein
LOC_Os08g12600Os.52923.1.S1_at1/118+7445021..7445674hypothetical protein
LOC_Os08g12610Os.20602.2.S1_x_at9/118+7446802..7448973hAT family dimerisation domain containing protein, expressed
LOC_Os08g12620Os.48015.1.A1_x_at1/118+7458351..7458743retrotransposon protein, putative, unclassified
LOC_Os08g12630OsAffx.5794.1.S1_at10/118+7464383..7465418hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29161.1.S1_at--1160--7474Chr08:12796262..12796286 (25 bp)
GTGGGCCCCTAAATCAGTGACATAC
NONE
OsAffx.29161.1.S1_at--414--7371Chr08:7161713..7161737 (25 bp)
GTGACATACATTCTAAGCCCATTTG
NONE
OsAffx.29161.1.S1_at--792--2231Chr08:7161680..7161704 (25 bp)
AAATTGGACTTTTGGGTCTTCTCAT
NONE
OsAffx.29161.1.S1_at--932--10831Chr08:7161669..7161693 (25 bp)
TTGGGTCTTCTCATGCAATTGCATA
NONE
OsAffx.29161.1.S1_at--841--9011Chr08:7161656..7161680 (25 bp)
TGCAATTGCATATCACCGGCAGACT
NONE
OsAffx.29161.1.S1_at--919--1771Chr08:7161642..7161666 (25 bp)
ACCGGCAGACTTTCGACAGATTGAT
NONE
OsAffx.29161.1.S1_at--381--10775Chr12:11674282..11674305 (24 bp)
TTGATCGATATATTTCCACCTCCTT
NONE
OsAffx.29161.1.S1_at--565--1754Chr11:11429806..11429829 (24 bp)
ACCTCCTTCTCTTCATTTATGAGTG
NONE
OsAffx.29161.1.S1_at--963--10438Chr12:11674315..11674339 (25 bp)
TTATGAGTGCTTCTCCTGCATACAT
NONE
OsAffx.29161.1.S1_at--857--4952Chr08:7200736..7200896 (25 bp)
GCATACATCGAGGTTGACACCGGCC
NONE
OsAffx.29161.1.S1_at--313--8892Chr08:7200494..7200518 (25 bp)
TGAGGAGCAGCAGCATGATTGCGCA
LOC_Os08g12240
Target Sequence 
GTGGGCCCCTAAATCAGTGACATACATTCTAAGCCCATTTGTGATTGTTAAATTGGACTTTTGGGTCTTCTCATGCAATT
GCATATCACCGGCAGACTTTCGACAGATTGATCGATATATTTCCACCTCCTTCTCTTCATTTATGAGTGCTTCTCCTGCA
TACATCGAGGTTGACACCGGCCTCAACATCATCGACGTCTTCGCCAAGCTAATCCGACAGAAGTTCACCGACACCATGAA
CAGGAGGGAGCTACTCCTCCAGAGCGACAAGAAGNCAGTTGCGGAGGCCTTCTGGCGGGGCATCNTGGATGGANGGGTCG
ATGACATGGTCCCCNCGGAAACGATGAGGACTCCNTGGCGTAGTGGCNGCCTTTTACCTCACACGCAGGGGTACACACAT
GAGGAGCAGCAGCATGATTGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis