Browse Element(s) Details


OsAffx.29169.3.S1_at

Description tigr:9636.m01277
TID=OsAffx.29169.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1298011/11expressed protein
LOC_Os04g346805/11retrotransposon protein, putative, unclassified
LOC_Os06g204904/11retrotransposon protein, putative, LINE subclass
LOC_Os03g325204/11retrotransposon protein, putative, LINE subclass
LOC_Os04g311804/11retrotransposon protein, putative, unclassified
LOC_Os08g087204/11retrotransposon protein, putative, unclassified
LOC_Os08g338704/11retrotransposon protein, putative, unclassified
LOC_Os05g087202/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12910NANA8+7669475..7672457retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12920NANA8+7673067..7679314transposon protein, putative, unclassified
LOC_Os08g12930OsAffx.5797.1.S1_at11/118+7680863..7681344hypothetical protein
LOC_Os08g12940NANA8+7683680..7685032transposon protein, putative, Pong sub-class
LOC_Os08g12950Os.25411.1.A1_at9/118+7685702..7686955transposon protein, putative, Pong sub-class
LOC_Os08g12960OsAffx.29173.2.S1_at11/118+7687480..7688523MATH domain containing protein
LOC_Os08g12960OsAffx.29173.1.S1_at5/118+7687480..7688523MATH domain containing protein
LOC_Os08g12970OsAffx.29168.1.S1_at11/118+7691945..7692957hypothetical protein
LOC_Os08g12980OsAffx.29169.3.S1_at11/118+7695123..7697084expressed protein
LOC_Os08g12980OsAffx.29169.1.S1_at1/118+7695123..7697084expressed protein
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified
LOC_Os08g13000OsAffx.29171.1.S1_at11/118+7711772..7712869BTB/POZ domain containing protein
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29169.3.S1_at--224--151Chr08:7696915..7696939 (25 bp)
ATTACCGTCAACTCTGCCTGCAAGA
LOC_Os08g12980
OsAffx.29169.3.S1_at--772--3251Chr08:7696907..7696931 (25 bp)
CAACTCTGCCTGCAAGATCTGGAGG
LOC_Os08g12980
OsAffx.29169.3.S1_at--852--7991Chr08:7695917..7695936 (20 bp)
GGAGAAGCTCATTGGAATTAATCGT
LOC_Os08g12980
OsAffx.29169.3.S1_at--317--7471Chr08:7695870..7695894 (25 bp)
GTGTGGATTATTACAATGGGACTCA
LOC_Os08g12980
OsAffx.29169.3.S1_at--344--9857Chr08:5047113..5047136 (24 bp)
TACAATGGGACTCAGGTCAGATTCT
LOC_Os08g08720
OsAffx.29169.3.S1_at--479--8216Chr06:11776060..11776084 (25 bp)
GGAATACTCCCTTTGCTGCTCGTTA
LOC_Os06g20490
OsAffx.29169.3.S1_at--1130--10692Chr08:7695804..7695828 (25 bp)
TTGCTGCTCGTTACCCGGCCTTATA
LOC_Os08g12980
OsAffx.29169.3.S1_at--18--4194Chr05:4759343..4759367 (25 bp)
CCCGGCCTTATACAACCTTGTGATA
LOC_Os05g08720
OsAffx.29169.3.S1_at--336--1455Chr08:5047208..5047232 (25 bp)
AGAATGAATCAGTGGCAGTGGTTAT
LOC_Os08g08720
OsAffx.29169.3.S1_at--354--2876Chr08:5047250..5047274 (25 bp)
AAGTGTCCTTTAGGAGGGCTATTGT
LOC_Os08g08720
OsAffx.29169.3.S1_at--81--3194Chr08:5047328..5047351 (24 bp)
CAATTGACCGAGCAGAATGATACCT
LOC_Os08g08720
Target Sequence 
ATTACCGTCAACTCTGCCTGCAAGATCTGGAGGAGAAGCTCATTGGAATTAATCGTGATGATATATGTGATATCATGTGT
GTGGATTATTACAATGGGACTCAGGTCAGATTCTGGGAGGATAAATGGAACGGGAATACTCCCTTTGCTGCTCGTTACCC
GGCCTTATACAACCTTGTGATAAACAAGAATGAATCAGTGGCAGTGGTTATGAGTAAAAGACCTCTAAAAGTGTCCTTTA
GGAGGGCTATTGTGGGTCATAATTTAAAAGCTTGGTTGGAAGTGGTCTCAAAGGTTATATCAATACAATTGACCGAGCAG
AATGATACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29169.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis