Browse Element(s) Details


OsAffx.29234.1.S1_x_at

Description tigr:9636.m01656
TID=OsAffx.29234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1649011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16470Os.27458.1.A1_at3/118+10079140..10081794expressed protein
LOC_Os08g16480Os.14911.1.S1_at11/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16480Os.47481.1.S1_at1/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16490OsAffx.29234.1.S1_x_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.29234.1.S1_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.5018.1.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.12942.2.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16500NANA8+10103422..10104715hypothetical protein
LOC_Os08g16510OsAffx.31869.1.S1_at8/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.5.S1_x_at5/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_s_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_x_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.2.S1_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.4.S1_x_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16520OsAffx.7527.1.S1_x_at1/118+10111005..10112326hypothetical protein
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29234.1.S1_x_at--838--9754Chr10:1337952..1337976 (25 bp)
TAATCTTCGACTACAACCATGCGGC
NONE
OsAffx.29234.1.S1_x_at--156--8611Chr08:10102665..10102689 (25 bp)
TGGGTTCAGGTTCTGTACGTCCAGC
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--524--6751Chr08:10102662..10102686 (25 bp)
GTTCAGGTTCTGTACGTCCAGCCTC
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--412--4911Chr08:10102593..10102617 (25 bp)
GCTTCTTCATGGACGTGGTGTTCGA
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--315--5691Chr08:10102564..10102588 (25 bp)
GACTTCTCAAGGTCCATCACCGTCG
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--180--9731Chr08:10102558..10102582 (25 bp)
TCAAGGTCCATCACCGTCGGAGGAT
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--499--7271Chr08:10102553..10102577 (25 bp)
GTCCATCACCGTCGGAGGATCGCCG
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--943--6313Chr09:13334555..13335048 (25 bp)
GATGAAGGAAGAAATCTATCACGTG
NONE
OsAffx.29234.1.S1_x_at--832--3694Chr07:9530754..9530774 (21 bp)
CTATCACGTGATAGGGATGGTGTCT
NONE
OsAffx.29234.1.S1_x_at--226--291Chr08:10102015..10102039 (25 bp)
ATAGGGATGGTGTCTACGAATGGAA
LOC_Os08g16490
OsAffx.29234.1.S1_x_at--940--3693Chr08:10102002..10102026 (25 bp)
CTACGAATGGAAGGAGTTCTACTCG
LOC_Os08g16490
Target Sequence 
TAATCTTCGACTACAACCATGCGGCCCAAGATGGGTTCAGGTTCTGTACGTCCAGCCTCCCTCTGCATGGTCCCGTGACC
GGGGAGGGCACCGTCGTCCTGCAGCTTCTTCATGGACGTGGTGTTCGAGGAAGACTTCTCAAGGTCCATCACCGTCGGAG
GATCGCCGGAGAACAGGATGAAGGAAGAAATCTATCACGTGATAGGGATGGTGTCTACGAATGGAAGGAGTTCTACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29234.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis