Browse Element(s) Details


OsAffx.29271.1.S1_at

Description tigr:9636.m01881
TID=OsAffx.29271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT000646 At3g09850F8A24_10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1917011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29271.1.S1_at--710--5691Chr08:11457469..11457493 (25 bp)
GACTCTGTCAAGCTGGGAACCTTTG
LOC_Os08g19170
OsAffx.29271.1.S1_at--645--7611Chr08:11457455..11457479 (25 bp)
GGGAACCTTTGAGATGCACACCAAG
LOC_Os08g19170
OsAffx.29271.1.S1_at--726--9691Chr08:11457419..11457443 (25 bp)
TAAGATGATGGCTAAGATGGGATTC
LOC_Os08g19170
OsAffx.29271.1.S1_at--35--10551Chr08:11457397..11457421 (25 bp)
TTCATTGAGGGAACTGGCCTGGGCA
LOC_Os08g19170
OsAffx.29271.1.S1_at--1004--1311Chr08:11457371..11457395 (25 bp)
AGATGGCCAAGGCATGATGCAGCCC
LOC_Os08g19170
OsAffx.29271.1.S1_at--237--6331Chr08:11457356..11457380 (25 bp)
GATGCAGCCCATCCAGCCAATTCAA
LOC_Os08g19170
OsAffx.29271.1.S1_at--557--3111Chr08:11457338..11457362 (25 bp)
AATTCAACGTCCCAAATCTCTTGGA
LOC_Os08g19170
OsAffx.29271.1.S1_at--810--3291Chr08:11457326..11457350 (25 bp)
CAAATCTCTTGGACTGGGAGTAGAA
LOC_Os08g19170
OsAffx.29271.1.S1_at--623--891Chr08:11457291..11457315 (25 bp)
AGGCTGAGGCAATCAAGGCAAGGTC
LOC_Os08g19170
OsAffx.29271.1.S1_at--693--8171Chr08:11457275..11457299 (25 bp)
GGCAAGGTCAGAACCACCAACCAAA
LOC_Os08g19170
OsAffx.29271.1.S1_at--612--971Chr08:11456945..11456969 (25 bp)
AGGAGAGCATAACCCCGTTGGCCGC
LOC_Os08g19170
Target Sequence 
GACTCTGTCAAGCTGGGAACCTTTGAGATGCACACCAAGGGCTTTGGTTCTAAGATGATGGCTAAGATGGGATTCATTGA
GGGAACTGGCCTGGGCAAAGATGGCCAAGGCATGATGCAGCCCATCCAGCCAATTCAACGTCCCAAATCTCTTGGACTGG
GAGTAGAATTTGACAGCGAGGCTGAGGCAATCAAGGCAAGGTCAGAACCACCAACCAAAGCAAGGTCAGAACCATGGCGG
AATTTGAGGAAAGTGGAGATTGGTGGCGTTGGTTCCTTTGAGAGGCATACAAAGGGCTTTGGATCCAAGATGATGGCGAG
GATGGGGTTCGTTGAGGGCTCTGGCCTGGGGAAGGATGGCCAGGGCATCGTCAACCCCTTGACTGCGCCGCTTGAGTTTG
ATAACCTAGTTGTATATATGCTAGGAGAGCATAACCCCGTTGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis