Browse Element(s) Details


OsAffx.29272.3.S1_x_at

Description tigr:9636.m01883
TID=OsAffx.29272.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1919011/11hypothetical protein
LOC_Os11g329808/11calcineurin-like phosphoesterase family protein, putative
LOC_Os06g422406/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19220Os.45976.1.S1_x_at1/118+11487582..11494927transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29272.3.S1_x_at--1019--8013Chr11:18987920..18987944 (25 bp)
GGAGGACTTGAAAACTCTATCCCAT
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--1040--10133Chr11:18987903..18987927 (25 bp)
TATCCCATACCCTCGAGATAACATG
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--550--5733Chr11:18987873..18987897 (25 bp)
GACTGGGTACATGCCTAGTGGTCCA
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--1046--4173Chr11:18987771..18987871 (25 bp)
CCCTAGCTCGCATTGGATTGCGTGA
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--193--3851Chr08:11467567..11467591 (25 bp)
CTGAGGCTGAACTACCAATTAAGGT
LOC_Os08g19190
OsAffx.29272.3.S1_x_at--437--6313Chr11:18987571..18987595 (25 bp)
GATGACGATGGCACTACTGCTTGCA
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--575--5093Chr11:18987549..18987573 (25 bp)
GCACGCCAAGTCCTCCAAATGAAAG
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--420--1352Chr11:18987442..18987466 (25 bp)
AGAGTTCCCACAACACAAGATGCAA
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--207--6332Chr11:18987424..18987448 (25 bp)
GATGCAAGCCAAGTGACTCAATGTT
LOC_Os11g32980
OsAffx.29272.3.S1_x_at--26--2791Chr08:11467248..11467272 (25 bp)
AAGAGAAGCATCAGCTCCACTGCAT
LOC_Os08g19190
OsAffx.29272.3.S1_x_at--1000--4771Chr08:11467235..11467259 (25 bp)
GCTCCACTGCATCCTGGTGAAAGAA
LOC_Os08g19190
Target Sequence 
GGAGGACTTGAAAACTCTATCCCATACCCTCGAGATAACATGGAGTGGACTGGGTACATGCCTAGTGGTCCACCCCTAGC
TCGCATTGGATTGCGTGAGATTAAAAATGCAGCATGGGGAATCAAATGTTGTATTACTAATGGATGCAAGAAGATAGGTA
AATCTATATTGATCACATGTCAGGGGAATATTAGGGATCTTAACTTGGAATACAAATTGCAAAACATGTTGTCTGAGGCT
GAACTACCAATTAAGGTTGAAGAAATTCCATCTGATGACGATGGCACTACTGCTTGCACGCCAAGTCCTCCAAATGAAAG
TTCCGTTGATGTATTTGATGAGTGGATGATCTCAGGAAAATGTTTTAGTAGATATATTGATCTAGGTGTGGAAACTACTA
ATAGAGTTCCCACAACACAAGATGCAAGCCAAGTGACTCAATGTTTGGAAAATGAAGATCTGGTGGCTTCAAGAGAAGCA
TCAGCTCCACTGCATCCTGGTGAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29272.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis