Browse Element(s) Details


OsAffx.29275.1.S1_at

Description tigr:9636.m01898
TID=OsAffx.29275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1934010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19300OsAffx.20020.1.S1_x_at3/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19300OsAffx.15695.1.S1_x_at2/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19310NANA8+11546177..11548597hypothetical protein
LOC_Os08g19320Os.14355.1.S1_at11/118+11552108..11557369Aberrant root formation protein 4, putative, expressed
LOC_Os08g19330OsAffx.17070.1.S1_at11/118+11557838..11558821hypothetical protein
LOC_Os08g19340OsAffx.29275.1.S1_at10/118+11561047..11562701expressed protein
LOC_Os08g19350NANA8+11564672..11570827retrotransposon protein, putative, unclassified
LOC_Os08g19360NANA8+11571445..11574671retrotransposon protein, putative, unclassified
LOC_Os08g19370Os.8258.2.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19370Os.8258.1.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19374Os.5762.2.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.3.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.1.S1_at11/118+11581470..11584571expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29275.1.S1_at--284--2491Chr08:11562559..11562583 (25 bp)
AACAGCTGGCTGTACGTGTGCAACA
LOC_Os08g19340
OsAffx.29275.1.S1_at--914--6431Chr08:11562497..11562521 (25 bp)
GATCACCATACAGTCAGTGCGTGTA
LOC_Os08g19340
OsAffx.29275.1.S1_at--314--9651Chr08:11562484..11562508 (25 bp)
TCAGTGCGTGTATTGCGTCGCCAAT
LOC_Os08g19340
OsAffx.29275.1.S1_at--605--6871Chr08:11562475..11562499 (25 bp)
GTATTGCGTCGCCAATAGCATCGCT
LOC_Os08g19340
OsAffx.29275.1.S1_at--927--9291Chr08:11561988..11562471 (25 bp)
TCCCTGTCCGATTTTTATGAACGTA
LOC_Os08g19340
OsAffx.29275.1.S1_at--968--8971Chr08:11561853..11561995 (25 bp)
TGAACGTATCATTTGCAGACTGCAA
LOC_Os08g19340
OsAffx.29275.1.S1_at--974--3411NONE
CAGACTGCAAAAAGAGAGCTCGCCT
NONE
OsAffx.29275.1.S1_at--567--1351Chr08:11561312..11561336 (25 bp)
AGAGAGCTCGCCTGGAACATAAGAC
LOC_Os08g19340
OsAffx.29275.1.S1_at--764--4251Chr08:11561302..11561326 (25 bp)
CCTGGAACATAAGACGGCCGACGGC
LOC_Os08g19340
OsAffx.29275.1.S1_at--492--4391Chr08:11561246..11561270 (25 bp)
GCCAGATCGCCGTGCGGTTAGCCGC
LOC_Os08g19340
OsAffx.29275.1.S1_at--402--9031Chr08:11561174..11561198 (25 bp)
TGCACATGTTGATGGGTGGTCTCCG
LOC_Os08g19340
Target Sequence 
AACAGCTGGCTGTACGTGTGCAACAGCTGCGTGCTGCCCACCACGGTGGGCGTAAACCCCATGATCACCATACAGTCAGT
GCGTGTATTGCGTCGCCAATAGCATCGCTGACTCCCTGTCCGATTTTTATGAACGTATCATTTGCAGACTGCAAAAAGAG
AGCTCGCCTGGAACATAAGACGGCCGACGGCGACGAGCGAGAGAGGAGCGAGGAAGGGCGCCGCCAGATCGCCGTGCGGT
TAGCCGCGGTGGTCTCCGGGTCCCTGATGCTCGCCGCCGCCGTGCTGCTGGAGATGCACATGTTGATGGGTGGTCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis