Browse Element(s) Details


OsAffx.29292.1.S1_at

Description tigr:9636.m02060
TID=OsAffx.29292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2100011/11hypothetical protein
LOC_Os03g328501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20937NANA8+12536955..12538180retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20952Os.24831.1.S1_x_at10/118+12541521..12544076retrotransposon protein, putative, unclassified
LOC_Os08g20952Os.24831.3.S1_x_at7/118+12541521..12544076retrotransposon protein, putative, unclassified
LOC_Os08g20952Os.24831.4.S1_x_at2/118+12541521..12544076retrotransposon protein, putative, unclassified
LOC_Os08g20952Os.24831.3.S1_s_at1/118+12541521..12544076retrotransposon protein, putative, unclassified
LOC_Os08g20967NANA8+12546351..12554920retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g20982OsAffx.22699.1.S1_x_at3/118+12557139..12557706retrotransposon protein, putative, unclassified
LOC_Os08g21000OsAffx.29292.1.S1_at11/118+12559440..12561743hypothetical protein
LOC_Os08g21020NANA8+12567500..12568627retrotransposon protein, putative, unclassified
LOC_Os08g21030NANA8+12573565..12574830retrotransposon protein, putative, unclassified
LOC_Os08g21050Os.24831.4.S1_x_at1/118+12580282..12582481retrotransposon protein, putative, unclassified
LOC_Os08g21060OsAffx.11549.1.S1_at1/118+12585903..12589304Zinc knuckle family protein
LOC_Os08g21060Os.31535.1.A1_at1/118+12585903..12589304Zinc knuckle family protein
LOC_Os08g21060OsAffx.31811.3.S1_x_at1/118+12585903..12589304Zinc knuckle family protein
LOC_Os08g21060OsAffx.31811.2.S1_x_at1/118+12585903..12589304Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29292.1.S1_at--491--4151Chr08:12561159..12561183 (25 bp)
CGCCGCGCTAACCGACTATTACAAT
LOC_Os08g21000
OsAffx.29292.1.S1_at--534--3971Chr08:12561288..12561312 (25 bp)
CGAGTCCGCAAAAAGGCATGCCAAA
LOC_Os08g21000
OsAffx.29292.1.S1_at--689--2411Chr08:12561297..12561321 (25 bp)
AAAAAGGCATGCCAAACTCTCCGCC
LOC_Os08g21000
OsAffx.29292.1.S1_at--1019--4391Chr08:12561363..12561387 (25 bp)
GCCAAAGATGCCTCTATCTTTGACT
LOC_Os08g21000
OsAffx.29292.1.S1_at--753--3631Chr08:12561386..12561410 (25 bp)
CTTTTCGGAGTGGACGCAATAGGCC
LOC_Os08g21000
OsAffx.29292.1.S1_at--879--9951Chr08:12561429..12561506 (25 bp)
TACGCCACTGCGTACGTTTGGCTGT
LOC_Os08g21000
OsAffx.29292.1.S1_at--356--1992Chr08:12561435..12561512 (25 bp)
ACTGCGTACGTTTGGCTGTGAGCAT
LOC_Os08g21000
OsAffx.29292.1.S1_at--291--10451Chr08:12561553..12561577 (25 bp)
TTAGTGCACAGGACGTTTCGCCTAC
LOC_Os08g21000
OsAffx.29292.1.S1_at--175--971Chr08:12561562..12561586 (25 bp)
AGGACGTTTCGCCTACGCTCCATGC
LOC_Os08g21000
OsAffx.29292.1.S1_at--49--1851Chr08:12561576..12561600 (25 bp)
ACGCTCCATGCGTGGCAGAAGCAGT
LOC_Os08g21000
OsAffx.29292.1.S1_at--890--611Chr08:12561583..12561607 (25 bp)
ATGCGTGGCAGAAGCAGTTCTGGCA
LOC_Os08g21000
Target Sequence 
CGCCGCGCTAACCGACTATTACAATCTTACTGAGCCGAAGATAGAGGCTCTTCGCCTGGAGGTTAGCAAGGCTGAGGCAA
GCGCTGCAGAGGAGTCGCAACGGTTTTCGTGGGAGATGGCGAAAGCCACCGAGTCCGCAAAAAGGCATGCCAAACTCTCC
GCCTTGCCCTTTCCGACATGGGTGCGAGGGTGCGAGGAGTCCCTGCCAAAGATGCCTCTATCTTTGACTTTTCGGAGTGG
ACGCAATAGGCCGGTGGTGCGGTTTCGGACTACGCCACTGCGTACGTTTGGCTGTGAGCATGTCGCCGAGTTCCCTAACT
ATGCGAAGGGGGACTGGGAGGTTAGTGCACAGGACGTTTCGCCTACGCTCCATGCGTGGCAGAAGCAGTTCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis