Browse Element(s) Details


OsAffx.29296.1.S1_at

Description tigr:9636.m02108
TID=OsAffx.29296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2155410/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21500NANA8+12807539..12809237hypothetical protein
LOC_Os08g21520Os.54774.1.S1_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21520OsAffx.25367.1.S1_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21520Os.54774.1.S1_x_at1/118+12817070..12819139retrotransposon, putative, centromere-specific
LOC_Os08g21530OsAffx.17096.1.S1_at11/118+12824503..12824934hypothetical protein
LOC_Os08g21540NANA8+12825911..12826333hypothetical protein
LOC_Os08g21554OsAffx.29296.1.S1_at10/118+12833246..12835701hypothetical protein
LOC_Os08g21570OsAffx.17097.1.S1_at11/118+12837551..12841490pentatricopeptide, putative, expressed
LOC_Os08g21580Os.3640.1.S1_at7/118+12841566..1284530025.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g21580OsAffx.25746.1.S1_x_at1/118+12841566..1284530025.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g21590Os.49809.1.S1_x_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.1.S1_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.2.S1_at10/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.48015.1.A1_x_at2/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.38764.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29296.1.S1_at--522--2531Chr08:12835646..12835670 (25 bp)
AACTAATCGGCCATGGCCTGACGGC
LOC_Os08g21554
OsAffx.29296.1.S1_at--1148--5611Chr08:12835578..12835602 (25 bp)
GACAACGGCATGGTGATTGTGACAA
LOC_Os08g21554
OsAffx.29296.1.S1_at--982--8811Chr08:12835565..12835589 (25 bp)
TGATTGTGACAACCACCCCGAAGAG
LOC_Os08g21554
OsAffx.29296.1.S1_at--840--9691Chr08:12835292..12835449 (25 bp)
TCAACTGCCAAGAGCCAGCACGAGA
LOC_Os08g21554
OsAffx.29296.1.S1_at--768--5971NONE
GAGACACTACTGATTGTTGCCGGCT
NONE
OsAffx.29296.1.S1_at--1053--8291Chr08:12833597..12833621 (25 bp)
GGCTTCACGCTTTGTGGTATGTTGA
LOC_Os08g21554
OsAffx.29296.1.S1_at--141--10791Chr08:12833569..12833593 (25 bp)
TTGTTGGCTTCTCTAGCGTGCTAGG
LOC_Os08g21554
OsAffx.29296.1.S1_at--1067--3691Chr08:12833557..12833581 (25 bp)
CTAGCGTGCTAGGACCGACGGTAGT
LOC_Os08g21554
OsAffx.29296.1.S1_at--116--991Chr08:12833483..12833507 (25 bp)
AGGAGTAGCATGGTTGTTAGCTTCC
LOC_Os08g21554
OsAffx.29296.1.S1_at--1004--2851Chr08:12833302..12833326 (25 bp)
AAGTCCTTGCAAGCAGGGCAACGTC
LOC_Os08g21554
OsAffx.29296.1.S1_at--732--7571Chr08:12833287..12833311 (25 bp)
GGGCAACGTCCACAAGATATCCGGG
LOC_Os08g21554
Target Sequence 
AACTAATCGGCCATGGCCTGACGGCGACGACCTCCTCCTCCTCCTGCTTCAGCTCCGGCGGTTCCGGCGACAACGGCATG
GTGATTGTGACAACCACCCCGAAGAGCGCTGCCGCCTCTGGTTCGCAGAAGCGGGCACGCACGCCGTCGTCGCCGTCGCA
GGGAGCAGAGCTGCTCGAGTACTCCAAGAAGCAGCGCGCCAACAACATGGAGACACAGAGCTCAACTGCCAAGAGCCAGC
ACGAGAGGAAGGAGATGCGTGAGAGGATTAGCGAGAGGAAGGAGACACTACTGATTGTTGCCGGCTTCACGCTTTGTGGT
ATGTTGAGTGTTGTTGGCTTCTCTAGCGTGCTAGGACCGACGGTAGTGGGCAGCGTGGGAGTCGACATGGCGGGTTTGAA
AAACGGGATGGTAGACAGGAGTAGCATGGTTGTTAGCTTCCAGGGTGTGGATGGTGGCATGGCAGGCAAGGAGGCATTGG
AAGGATTAAAGTCCTTGCAAGCAGGGCAACGTCCACAAGATATCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis