Browse Element(s) Details


OsAffx.29300.1.S1_at

Description tigr:9636.m02132
TID=OsAffx.29300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2183011/11hypothetical protein
LOC_Os06g224801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21770NANA8+12994697..12998846retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21780NANA8+12999660..13001544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21790NANA8+13003127..13006000hypothetical protein
LOC_Os08g21800NANA8+13006829..13010601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g21804Os.52447.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804OsAffx.13218.1.S1_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21804Os.52447.1.S1_x_at1/118+13011043..13013330retrotransposon, putative, centromere-specific
LOC_Os08g21810OsAffx.17101.1.S1_at11/118+13016416..13017719hypothetical protein
LOC_Os08g21820OsAffx.29299.1.S1_at11/118+13018727..13019881hypothetical protein
LOC_Os08g21830OsAffx.29300.1.S1_at11/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_x_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21830OsAffx.28682.2.S1_at2/118+13022302..13022904hypothetical protein
LOC_Os08g21840Os.21077.1.S1_at11/118+13032187..13035547ribosomal protein L15 containing protein, expressed
LOC_Os08g21849OsAffx.5893.1.S1_at11/118+13038889..13039542hypothetical protein
LOC_Os08g21860NANA8+13043004..13049666retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29300.1.S1_at--415--2891Chr08:13022579..13022602 (24 bp)
AAGGGTCGTCTTGATTCAGCTATGC
LOC_Os08g21830
OsAffx.29300.1.S1_at--236--6571Chr08:13022590..13022614 (25 bp)
GATTCAGCTATGCATCATGCTTTCA
LOC_Os08g21830
OsAffx.29300.1.S1_at--938--3671Chr08:13022609..13022633 (25 bp)
CTTTCATCAACCAATCTGCGATCTT
LOC_Os08g21830
OsAffx.29300.1.S1_at--413--3831Chr08:13022624..13022648 (25 bp)
CTGCGATCTTGGTCAACACTTTGTC
LOC_Os08g21830
OsAffx.29300.1.S1_at--709--1091Chr08:13022719..13022743 (25 bp)
AGTGGTGTTTTTCCCAAATACAGAG
LOC_Os08g21830
OsAffx.29300.1.S1_at--748--9811Chr08:13022754..13022778 (25 bp)
TAAACTTGGAAGTGGTCAGCCTCAA
LOC_Os08g21830
OsAffx.29300.1.S1_at--1033--7491Chr08:13022765..13022789 (25 bp)
GTGGTCAGCCTCAAGAAAACTTCAT
LOC_Os08g21830
OsAffx.29300.1.S1_at--1058--1411Chr08:13022778..13022802 (25 bp)
AGAAAACTTCATGTCGGCGTCAGGA
LOC_Os08g21830
OsAffx.29300.1.S1_at--573--9451Chr08:13022791..13022815 (25 bp)
TCGGCGTCAGGATTAGCGCAGCCAA
LOC_Os08g21830
OsAffx.29300.1.S1_at--788--2391Chr08:13022815..13022839 (25 bp)
AAACAACAGCCGACATCAGGAGCTC
LOC_Os08g21830
OsAffx.29300.1.S1_at--725--2772Chr08:13022841..13022865 (25 bp)
AAGACCAAGCACCATGACACCTGAG
LOC_Os08g21830
Target Sequence 
AAGGGTCGTCTTGATTCAGCTATGCATCATGCTTTCATCAACCAATCTGCGATCTTGGTCAACACTTTGTCAAATTTGGT
CAAGTCAGTGGTTGACGGATCAATTGCTGAGGAGAAAGCAAGAGGACTAGTATATTTGCCAAGTGGTGTTTTTCCCAAAT
ACAGAGAAGTTAGGACTAAACTTGGAAGTGGTCAGCCTCAAGAAAACTTCATGTCGGCGTCAGGATTAGCGCAGCCAAAA
CAACAGCCGACATCAGGAGCTCCAAGACCAAGCACCATGACACCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis