Browse Element(s) Details


OsAffx.29306.1.S1_at

Description tigr:9636.m02178
TID=OsAffx.29306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2237011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22340NANA8+13329727..13335234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22354Os.10871.1.S1_at11/118+13339181..13346628Polyadenylate-binding protein 2, putative, expressed
LOC_Os08g22370OsAffx.29306.1.S1_at11/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.24405.1.S1_at3/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.39684.2.S1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.29667.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.7641.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.38992.1.A1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22380Os.46874.2.S1_at11/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22380Os.46874.1.S1_x_at4/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22389NANA8+13372760..13373040hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29306.1.S1_at--631--4471Chr08:13356327..13356351 (25 bp)
GCCTGATTCAGTTTCCGGATAGCTT
LOC_Os08g22370
OsAffx.29306.1.S1_at--332--3971Chr08:13356312..13356336 (25 bp)
CGGATAGCTTATGCGCCAGGTTGTT
LOC_Os08g22370
OsAffx.29306.1.S1_at--264--291Chr08:13356256..13356280 (25 bp)
ATAGATGCTGTTTTCCTGGGTGACT
LOC_Os08g22370
OsAffx.29306.1.S1_at--897--3891Chr08:13356241..13356265 (25 bp)
CTGGGTGACTCATCGGTGACTTGGA
LOC_Os08g22370
OsAffx.29306.1.S1_at--123--5531Chr08:13355925..13355949 (25 bp)
GAAAAGTCAGGTCTCTTCTCTATTC
LOC_Os08g22370
OsAffx.29306.1.S1_at--642--7311Chr08:13355883..13355907 (25 bp)
GTGCTGCATGCTAGGCTTGATTCTA
LOC_Os08g22370
OsAffx.29306.1.S1_at--828--111Chr08:13355864..13355888 (25 bp)
ATTCTAATCTTGGTTCTTCCAGCTC
LOC_Os08g22370
OsAffx.29306.1.S1_at--631--4251Chr08:13355793..13355817 (25 bp)
CCGGTGCCCCATAAGATCAAGATTT
LOC_Os08g22370
OsAffx.29306.1.S1_at--783--2211Chr08:13355750..13355774 (25 bp)
ACAAGGGTCTTGCTACTATACGAAA
LOC_Os08g22370
OsAffx.29306.1.S1_at--185--10051Chr08:13355725..13355749 (25 bp)
TAGATGCTCCCGAAACCTGGAAGTT
LOC_Os08g22370
OsAffx.29306.1.S1_at--999--8191Chr08:13355707..13355731 (25 bp)
GGAAGTTGATGCTACCTATCGTATT
LOC_Os08g22370
Target Sequence 
GCCTGATTCAGTTTCCGGATAGCTTATGCGCCAGGTTGTTGAAGGCTAAATATTTCCCTAACAGTGAGTTAATAGATGCT
GTTTTCCTGGGTGACTCATCGGTGACTTGGAAGAGCCTGGAATATGGTCTTCAATTGCTGAAGAAAGGTCTGATTTGGCG
TATTGGAGATGGGACAAAAAAATTCTCAAAATTAAACTGCCTCAATATCAGACAGGATTTTCTTGCGTGGCATTATGAAA
AGTCAGGTCTCTTCTCTATTCAAAGTGCTTACAAGTTGGTGCTGCATGCTAGGCTTGATTCTAATCTTGGTTCTTCCAGC
TCGGCTGCAAATGGTGAGCGCAGTATTTGGGGCTCCATCTCGAAAACACCGGTGCCCCATAAGATCAAGATTTTCGCTTG
GAGGCTAGCTAACAAGGGTCTTGCTACTATACGAAATAGATGCTCCCGAAACCTGGAAGTTGATGCTACCTATCGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis