Browse Element(s) Details


OsAffx.29315.1.S1_at

Description tigr:9636.m02278
TID=OsAffx.29315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g233804/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23360Os.52031.1.S1_at11/118+13972972..13984908Signal recognition particle 68 kDa protein, putative, expressed
LOC_Os08g23360Os.8747.3.S1_x_at1/118+13972972..13984908Signal recognition particle 68 kDa protein, putative, expressed
LOC_Os08g23370OsAffx.10020.1.S1_x_at1/118+13996193..13996602hypothetical protein
LOC_Os08g23380OsAffx.29315.1.S1_at4/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23380OsAffx.3810.1.S1_at3/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23400OsAffx.22947.1.S1_x_at1/118+14010252..14014703retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23410Os.5188.2.S1_x_at11/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23410Os.5188.2.S1_s_at4/118+14025037..14026018Rubredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29315.1.S1_at--602--6054Chr08:14020017..14020041 (25 bp)
GAGATTTGGACCATTGGCTGGCATA
NONE
OsAffx.29315.1.S1_at--37--1051Chr08:14019970..14019994 (25 bp)
AGGTGACGAGTGTAGCAGCGCACAT
NONE
OsAffx.29315.1.S1_at--503--4594Chr08:14019953..14019977 (25 bp)
GCGCACATGTGGAAGATCGGATGCT
NONE
OsAffx.29315.1.S1_at--1018--6391Chr08:14019939..14019963 (25 bp)
GATCGGATGCTATTATGTTCATGAA
NONE
OsAffx.29315.1.S1_at--406--1913Chr08:14019501..14019525 (25 bp)
ACGTGTGAGCACTCGTTGGAAAGCT
NONE
OsAffx.29315.1.S1_at--1059--5551Chr08:14019483..14019507 (25 bp)
GAAAGCTAACTTCATGGCCCAGGTG
NONE
OsAffx.29315.1.S1_at--104--2531Chr08:14019476..14019500 (25 bp)
AACTTCATGGCCCAGGTGGTGGATA
NONE
OsAffx.29315.1.S1_at--1136--1071Chr08:14019452..14019476 (25 bp)
AGGGCTCAGGACACAAATTTGTTCT
NONE
OsAffx.29315.1.S1_at--589--2251Chr08:14019438..14019462 (25 bp)
AAATTTGTTCTGGTTCCACCGCAAG
NONE
OsAffx.29315.1.S1_at--822--7872Chr12:12235826..12235850 (25 bp)
GGTTCCACCGCAAGAGCCGAAACAA
NONE
OsAffx.29315.1.S1_at--412--2475Chr12:10273135..10273159 (25 bp)
AACAAATTGACGGTGCTGCAGAGAA
NONE
Target Sequence 
GAGATTTGGACCATTGGCTGGCATAAACAACATGGGGGTCCAGCCGGAGGTGACGAGTGTAGCAGCGCACATGTGGAAGA
TCGGATGCTATTATGTTCATGAAGTTCATGGCGAATTCCGCATTGATGAGAAGGCTTTCAACATGAATGGCTTATATATT
AGGAAAGTCCGTTTTGGACGTGTGAGCACTCGTTGGAAAGCTAACTTCATGGCCCAGGTGGTGGATAGGGCTCAGGACAC
AAATTTGTTCTGGTTCCACCGCAAGAGCCGAAACAAATTGACGGTGCTGCAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis