Browse Element(s) Details


OsAffx.29320.1.S1_at

Description tigr:9636.m02319
TID=OsAffx.29320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2375011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29320.1.S1_at--916--3311Chr08:14234689..14234713 (25 bp)
CACATGATCAGAAGGGCGCGTCAAA
LOC_Os08g23750
OsAffx.29320.1.S1_at--525--9631Chr08:14234682..14234706 (25 bp)
TCAGAAGGGCGCGTCAAATTCAGGT
LOC_Os08g23750
OsAffx.29320.1.S1_at--794--8391Chr08:14234675..14234699 (25 bp)
GGCGCGTCAAATTCAGGTGAGGATT
LOC_Os08g23750
OsAffx.29320.1.S1_at--512--1311Chr08:14234607..14234631 (25 bp)
AGAGGCAAGGAATCGCAATCGTGGC
LOC_Os08g23750
OsAffx.29320.1.S1_at--703--5251Chr08:14234598..14234622 (25 bp)
GAATCGCAATCGTGGCAAGGCTGAG
LOC_Os08g23750
OsAffx.29320.1.S1_at--324--4711Chr08:14234540..14234564 (25 bp)
GCGGCGCGATGCGTTGGCAACATCG
LOC_Os08g23750
OsAffx.29320.1.S1_at--1122--7551Chr08:14234510..14234534 (25 bp)
GGGCGTGATGCGTCGGCGGCATTGG
LOC_Os08g23750
OsAffx.29320.1.S1_at--475--4711Chr08:14234440..14234464 (25 bp)
GCGGCCGTTGGCGTGGGCACAGGGA
LOC_Os08g23750
OsAffx.29320.1.S1_at--79--3471Chr08:14234421..14234445 (25 bp)
CAGGGAGGAACGATGGACAGCAACA
LOC_Os08g23750
OsAffx.29320.1.S1_at--815--4091Chr08:14234378..14234402 (25 bp)
CGACGAGGCACGGACCGCGATGACA
LOC_Os08g23750
OsAffx.29320.1.S1_at--1161--1771Chr08:14234318..14234342 (25 bp)
ACCGCAGCGGTAACGGGCAAGGGCA
LOC_Os08g23750
Target Sequence 
CACATGATCAGAAGGGCGCGTCAAATTCAGGTGAGGATTTGGCGAGGCAGAAGGGCCGCGTCGGTGGCGGTAGCAGAATG
GGAGAGGCAAGGAATCGCAATCGTGGCAAGGCTGAGGAGATTGCAGTTGGGGGTTGGGGTAGAAGGACGGCGGCGCGATG
CGTTGGCAACATCGGGGGCGGGCGTGATGCGTCGGCGGCATTGGGGGCGATTGGGGTGGGCAGAGGGGGCTGCGAGGATG
TCGTCGGGGGCGGCCGTTGGCGTGGGCACAGGGAGGAACGATGGACAGCAACAACGATTCAAGGGGCGCAGCGACGAGGC
ACGGACCGCGATGACAGCGGAGGGGAGCGATGCGGCGCCGAGAGCGAGGGGACCGCAGCGGTAACGGGCAAGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis