Browse Element(s) Details


OsAffx.29386.1.S1_at

Description gb:NM_188888.1
DB_XREF= gi:34904859
GEN=OJ1484_G09.24
TID=OsAffx.29386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.24 (OJ1484_G09.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2781011/11Calcium binding EGF domain containing protein, expressed
LOC_Os09g074801/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29386.1.S1_at--165--7091Chr08:16807199..16807219 (21 bp)
GTCACAGCCTGTGGCCAAATAACTT
LOC_Os08g27810
OsAffx.29386.1.S1_at--1028--2152Chr09:10236355..10236386 (25 bp)
ACAGCCTGTGGCCAAATAACTTTGT
NONE
OsAffx.29386.1.S1_at--972--4478Chr09:3746019..3746038 (20 bp)
GCCTGTGGCCAAATAACTTTGTCAC
LOC_Os09g07480
OsAffx.29386.1.S1_at--12--3271Chr08:16807184..16807208 (25 bp)
CAAATAACTTTGTCACGTCACGCAC
LOC_Os08g27810
OsAffx.29386.1.S1_at--810--3071Chr08:16807182..16807206 (25 bp)
AATAACTTTGTCACGTCACGCACAG
LOC_Os08g27810
OsAffx.29386.1.S1_at--221--2531Chr08:16807179..16807203 (25 bp)
AACTTTGTCACGTCACGCACAGCTG
LOC_Os08g27810
OsAffx.29386.1.S1_at--1047--10251Chr08:16807176..16807200 (25 bp)
TTTGTCACGTCACGCACAGCTGGCG
LOC_Os08g27810
OsAffx.29386.1.S1_at--1086--7091Chr08:16807173..16807197 (25 bp)
GTCACGTCACGCACAGCTGGCGCGG
LOC_Os08g27810
OsAffx.29386.1.S1_at--964--3911Chr08:16807157..16807181 (25 bp)
CTGGCGCGGCAGTGCTGTCCTGCCA
LOC_Os08g27810
OsAffx.29386.1.S1_at--269--8271Chr08:16807150..16807174 (25 bp)
GGCAGTGCTGTCCTGCCACACTAGC
LOC_Os08g27810
OsAffx.29386.1.S1_at--789--10691Chr08:16807122..16807146 (25 bp)
TTGCCACGCTACCATGGCTGGCGTG
LOC_Os08g27810
Target Sequence 
GTCACAGCCTGTGGCCAAATAACTTTGTCACGTCACGCACAGCTGGCGCGGCAGTGCTGTCCTGCCACACTAGCCTCTTG
CCACGCTACCATGGCTGGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis