Browse Element(s) Details


OsAffx.29399.1.S1_at

Description tigr:9636.m02811
TID=OsAffx.29399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nine-cis-epoxycarotenoid dioxygenase1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2841011/11Retinal pigment epithelial membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28390NANA8+17181056..17182773retrotransposon protein, putative, unclassified
LOC_Os08g28400OsAffx.29398.1.S1_at11/118+17187749..17190395expressed protein
LOC_Os08g28400Os.25556.1.S1_x_at7/118+17187749..17190395expressed protein
LOC_Os08g28410OsAffx.29399.1.S1_at11/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28410Os.50043.1.A1_at1/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28420OsAffx.5964.1.S1_at11/118+17216612..17217773hypothetical protein
LOC_Os08g28430OsAffx.17209.1.S1_at11/118+17218761..17219235hypothetical protein
LOC_Os08g28430Os.25556.1.S1_x_at1/118+17218761..17219235hypothetical protein
LOC_Os08g28439OsAffx.22452.1.S1_x_at1/118+17222940..17223241NA
LOC_Os08g28450NANA8+17226929..17230663retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g28460OsAffx.29400.1.S1_at10/118+17234716..17239388NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0016118biological_processcarotenoid catabolism
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29399.1.S1_at--1003--2111Chr08:17207876..17207900 (25 bp)
ACAGTGGACCTTACTAGGATTCTAA
LOC_Os08g28410
OsAffx.29399.1.S1_at--193--1331Chr08:17207770..17207876 (25 bp)
AGAGGAGCTCCGTTGATTGATTTTG
LOC_Os08g28410
OsAffx.29399.1.S1_at--443--2731Chr08:17207729..17207753 (25 bp)
AAGAATTGGAGTCATGCCCCGTCAT
LOC_Os08g28410
OsAffx.29399.1.S1_at--624--5431Chr08:17207671..17207695 (25 bp)
GAACCATTTTGCACATTGCATCTCA
LOC_Os08g28410
OsAffx.29399.1.S1_at--116--3611Chr08:17207658..17207682 (25 bp)
CATTGCATCTCATCAATTGCTTTGA
LOC_Os08g28410
OsAffx.29399.1.S1_at--538--4031Chr08:17207260..17207284 (25 bp)
CGAGTGCCGGGTTCCATAATTACTG
LOC_Os08g28410
OsAffx.29399.1.S1_at--66--8291Chr08:17207236..17207260 (25 bp)
GGCATAACACTTGAGCACACGGCTA
LOC_Os08g28410
OsAffx.29399.1.S1_at--859--5851Chr08:17207206..17207230 (25 bp)
GAGCCAGCTAATCAAGGACCCAGTG
LOC_Os08g28410
OsAffx.29399.1.S1_at--1098--431Chr08:17207177..17207201 (25 bp)
ATCTTTTCCTCGCTTATATGAGTGG
LOC_Os08g28410
OsAffx.29399.1.S1_at--913--3091Chr08:17207067..17207091 (25 bp)
AATATGCTGGCCTGCATCACAAGTA
LOC_Os08g28410
OsAffx.29399.1.S1_at--396--8231Chr08:17206032..17206056 (25 bp)
GGCACATGTCATTGATGCTCAGAGA
LOC_Os08g28410
Target Sequence 
ACAGTGGACCTTACTAGGATTCTAAGAGGAGCTCCGTTGATTGATTTTGAAACAGAAAGTTATGCAAGAATTGGAGTCAT
GCCCCGTCATGGAGATGCAGATTCAGTAATATGGTTCGATGTAGAACCATTTTGCACATTGCATCTCATCAATTGCTTTG
AGGAAGATCATGAGGTTGTCATCAGAGGATTTCGAGTGCCGGGTTCCATAATTACTGGCATAACACTTGAGCACACGGCT
AATGAAGAGCCAGCTAATCAAGGACCCAGTGAGAAATCTTTTCCTCGCTTATATGAGTGGAGATTAAACATGAAAAGCAG
GGCTGTCACAGTGATCAATAACAAATATGCTGGCCTGCATCACAAGTATGCATATGCACAAGTGATTGATGTCCAAGGGA
GCCTGGAAGGTGGCTGTGGAACAGTGCGACCAAAATTTGGAGGTTTCGCAAAACTACATCTTCAAGATAACAACAAGGCA
CATGTCATTGATGCTCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis