Browse Element(s) Details


OsAffx.29398.1.S1_at

Description tigr:9636.m02810
TID=OsAffx.29398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2840011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28350Os.25556.1.S1_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_x_at11/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.25556.1.S1_x_at3/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.32056.1.S1_at2/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350OsAffx.5211.1.S1_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28350Os.17546.2.S1_x_at1/118+17162446..17171122transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28360OsAffx.29396.3.S1_at11/118+17171692..17173987hypothetical protein
LOC_Os08g28370OsAffx.29397.1.S1_at11/118+17175393..17176177hypothetical protein
LOC_Os08g28370OsAffx.20020.1.S1_x_at1/118+17175393..17176177hypothetical protein
LOC_Os08g28380OsAffx.17208.1.S1_at7/118+17179139..17179948expressed protein
LOC_Os08g28390NANA8+17181056..17182773retrotransposon protein, putative, unclassified
LOC_Os08g28400OsAffx.29398.1.S1_at11/118+17187749..17190395expressed protein
LOC_Os08g28400Os.25556.1.S1_x_at7/118+17187749..17190395expressed protein
LOC_Os08g28410OsAffx.29399.1.S1_at11/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed
LOC_Os08g28410Os.50043.1.A1_at1/118+17205933..17216128Retinal pigment epithelial membrane protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29398.1.S1_at--885--2575Chr03:5697887..5697911 (25 bp)
AACGGATCGGATTCGGACGGATAGT
NONE
OsAffx.29398.1.S1_at--843--10611Chr08:17188094..17188118 (25 bp)
TTCGGACGGATAGTGGTCACACCAT
LOC_Os08g28400
OsAffx.29398.1.S1_at--156--7511Chr08:17188082..17188106 (25 bp)
GTGGTCACACCATTGTTAACAGTGA
LOC_Os08g28400
OsAffx.29398.1.S1_at--133--8591Chr08:17188053..17188077 (25 bp)
TGGTAAGCCCCGAAGTCCTGATCGG
LOC_Os08g28400
OsAffx.29398.1.S1_at--445--7251Chr08:17188039..17188063 (25 bp)
GTCCTGATCGGCCTAGAGTTAGTAT
LOC_Os08g28400
OsAffx.29398.1.S1_at--359--6791Chr08:17188022..17188046 (25 bp)
GTTAGTATTGGCTTCAGAGTTCTGG
LOC_Os08g28400
OsAffx.29398.1.S1_at--642--9652Chr08:17188009..17188033 (25 bp)
TCAGAGTTCTGGAATCAGCCGATGA
LOC_Os08g28400
OsAffx.29398.1.S1_at--70--3911Chr08:17188001..17188025 (25 bp)
CTGGAATCAGCCGATGAGAGTCATC
LOC_Os08g28400
OsAffx.29398.1.S1_at--1140--6011Chr08:17187986..17188010 (25 bp)
GAGAGTCATCAAGTCGCTAGTAATC
LOC_Os08g28400
OsAffx.29398.1.S1_at--571--1451Chr08:17187924..17187948 (25 bp)
AGAAGAGACCGTGTTCAAGGAAGAT
LOC_Os08g28400
OsAffx.29398.1.S1_at--508--10071Chr08:17187831..17187855 (25 bp)
TAGTGTCCCATAAGGATTTTATGTT
LOC_Os08g28400
Target Sequence 
AACGGATCGGATTCGGACGGATAGTGGTCACACCATTGTTAACAGTGAAATTTGGTAAGCCCCGAAGTCCTGATCGGCCT
AGAGTTAGTATTGGCTTCAGAGTTCTGGAATCAGCCGATGAGAGTCATCAAGTCGCTAGTAATCAGATTAAGAAAATTAA
TCAATTAAAGAAAGCTTATCTAGAAGAGACCGTGTTCAAGGAAGATGTGGCATGGCAGTTTATCTATTAATTAGGAAGAG
TTTGTGTTTCCTTTTATCTTTAGGAAAGTGTGTTTAGTGTCCCATAAGGATTTTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis